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The map label for this gene is rbsC [H]

Identifier: 225686751

GI number: 225686751

Start: 959377

End: 960336

Strand: Reverse

Name: rbsC [H]

Synonym: BMEA_B0979

Alternate gene names: 225686751

Gene position: 960336-959377 (Counterclockwise)

Preceding gene: 225686752

Following gene: 225686750

Centisome position: 81.01

GC content: 57.08

Gene sequence:

>960_bases
ATGCAACAGGATATGGCCGGAAATCTCTATATCGCCGTTCAACGCCGCCGAAACAGGGGGCTGATCGGGCTTTATGCCGT
CGTCGGCATTTTTGTTCTGCTCTATGCCTGGTTATTTCCGGGAATTCTGAGCGTTAGCGGCTTTTCCAAGTTTACGCAAA
ACTGGTTTCCGCTGGCGCTGGTGACAATGGCGCAGGCGCTGTTGATGCTGAATGGCGGCATTACGCTTGCCATCGGTCCG
CTGGTAAGCCTGGGTGCGGTCATCGCTGCAACCACGATGGGCAGTGCTTTTGGCGTTTTCGGCGGTGTCGCTGCTGTTAT
TCTGAGTGGCTTTGTCATCGGTGCGCTGACGGGCTCCATCGTTGCGTTCATGCGCCTTCCGGCCATCATCGTGACATTGG
CGGGTTCCTTCATCATCACCGGAATAGCCCTGCTTATCCTGCCCCGGCCGGGCGGTTACATTCCCGGCTGGCTCTCCGAT
TTTCTGGCAGGCCATTCGCCTTCGGCCTTTATTATTCTGGTGCTTGTCATACTGGGCTGGAAACTATTCCTTGCCACCCC
GATGGGGCTTGGCATCTATGCCGCCGGTGAAAATCCGGTCGGGGCCTATCGCTCCGGTGTTCCGGTCGAGAAGGTCAAGG
TCATCTCCTTTGCCCTGTCGGGCGTTCTGGCCACCTGTGCGGGGCTGTTCGTGGCCGCGCAAACAGGATCGGGCGATCCG
GTTATCGGCACGCCCTTCACGCTTAATTCCATTGCAGCGGCTGTATTGGGCGGCGTCGGCTTTCTTGGCGGAAAAGGCAC
GATGCGCGGTGCCATCTGCGGCAGCCTTCTTCTCTCCGTGATGATTAACGTTATGTTCTTCTTGGGCTTTCCTCCTGTGG
CGCAATATATCGCCCAAGGGCTGATTATTGTTGGTGCGGTGGCCTTGCCGGAATTTGCAGGCAAATGGAGGAAGTCATGA

Upstream 100 bases:

>100_bases
GCGAGGGCCGCATAGTCGCGACCCTGAAACACGGGGATCTGTCGGAAGAGGCAATTGTAAGGGCTGCCATGGGCCTGAAA
TCGTCGAGAAAGGCAGCCTG

Downstream 100 bases:

>100_bases
ATTCGCTTCCGCTGACCGGGCGTCGTCTGTTGCAAAGCCCGCCTCTCCTCACCTTGCTTCTGGTTGCGCTGGTCTGGCTT
GTCGCCAGCCTGACATTGCG

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MQQDMAGNLYIAVQRRRNRGLIGLYAVVGIFVLLYAWLFPGILSVSGFSKFTQNWFPLALVTMAQALLMLNGGITLAIGP
LVSLGAVIAATTMGSAFGVFGGVAAVILSGFVIGALTGSIVAFMRLPAIIVTLAGSFIITGIALLILPRPGGYIPGWLSD
FLAGHSPSAFIILVLVILGWKLFLATPMGLGIYAAGENPVGAYRSGVPVEKVKVISFALSGVLATCAGLFVAAQTGSGDP
VIGTPFTLNSIAAAVLGGVGFLGGKGTMRGAICGSLLLSVMINVMFFLGFPPVAQYIAQGLIIVGAVALPEFAGKWRKS

Sequences:

>Translated_319_residues
MQQDMAGNLYIAVQRRRNRGLIGLYAVVGIFVLLYAWLFPGILSVSGFSKFTQNWFPLALVTMAQALLMLNGGITLAIGP
LVSLGAVIAATTMGSAFGVFGGVAAVILSGFVIGALTGSIVAFMRLPAIIVTLAGSFIITGIALLILPRPGGYIPGWLSD
FLAGHSPSAFIILVLVILGWKLFLATPMGLGIYAAGENPVGAYRSGVPVEKVKVISFALSGVLATCAGLFVAAQTGSGDP
VIGTPFTLNSIAAAVLGGVGFLGGKGTMRGAICGSLLLSVMINVMFFLGFPPVAQYIAQGLIIVGAVALPEFAGKWRKS
>Mature_319_residues
MQQDMAGNLYIAVQRRRNRGLIGLYAVVGIFVLLYAWLFPGILSVSGFSKFTQNWFPLALVTMAQALLMLNGGITLAIGP
LVSLGAVIAATTMGSAFGVFGGVAAVILSGFVIGALTGSIVAFMRLPAIIVTLAGSFIITGIALLILPRPGGYIPGWLSD
FLAGHSPSAFIILVLVILGWKLFLATPMGLGIYAAGENPVGAYRSGVPVEKVKVISFALSGVLATCAGLFVAAQTGSGDP
VIGTPFTLNSIAAAVLGGVGFLGGKGTMRGAICGSLLLSVMINVMFFLGFPPVAQYIAQGLIIVGAVALPEFAGKWRKS

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=304, Percent_Identity=30.9210526315789, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1788896, Length=300, Percent_Identity=29, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI145693152, Length=256, Percent_Identity=30.078125, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1790524, Length=269, Percent_Identity=32.3420074349442, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1789992, Length=132, Percent_Identity=36.3636363636364, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI87082395, Length=275, Percent_Identity=31.6363636363636, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788471, Length=276, Percent_Identity=33.695652173913, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787793, Length=271, Percent_Identity=28.7822878228782, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 32825; Mature: 32825

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQDMAGNLYIAVQRRRNRGLIGLYAVVGIFVLLYAWLFPGILSVSGFSKFTQNWFPLAL
CCCCCCCCEEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
VTMAQALLMLNGGITLAIGPLVSLGAVIAATTMGSAFGVFGGVAAVILSGFVIGALTGSI
HHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAFMRLPAIIVTLAGSFIITGIALLILPRPGGYIPGWLSDFLAGHSPSAFIILVLVILGW
HHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHH
KLFLATPMGLGIYAAGENPVGAYRSGVPVEKVKVISFALSGVLATCAGLFVAAQTGSGDP
HHHHHCCCCCEEEECCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCC
VIGTPFTLNSIAAAVLGGVGFLGGKGTMRGAICGSLLLSVMINVMFFLGFPPVAQYIAQG
CCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LIIVGAVALPEFAGKWRKS
HHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQQDMAGNLYIAVQRRRNRGLIGLYAVVGIFVLLYAWLFPGILSVSGFSKFTQNWFPLAL
CCCCCCCCEEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
VTMAQALLMLNGGITLAIGPLVSLGAVIAATTMGSAFGVFGGVAAVILSGFVIGALTGSI
HHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAFMRLPAIIVTLAGSFIITGIALLILPRPGGYIPGWLSDFLAGHSPSAFIILVLVILGW
HHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHH
KLFLATPMGLGIYAAGENPVGAYRSGVPVEKVKVISFALSGVLATCAGLFVAAQTGSGDP
HHHHHCCCCCEEEECCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCC
VIGTPFTLNSIAAAVLGGVGFLGGKGTMRGAICGSLLLSVMINVMFFLGFPPVAQYIAQG
CCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LIIVGAVALPEFAGKWRKS
HHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]