Click here to switch to the map view.

The map label for this gene is yjgF [C]

Identifier: 225686520

GI number: 225686520

Start: 712128

End: 712499

Strand: Direct

Name: yjgF [C]

Synonym: BMEA_B0728

Alternate gene names: 225686520

Gene position: 712128-712499 (Clockwise)

Preceding gene: 225686519

Following gene: 225686521

Centisome position: 60.07

GC content: 58.06

Gene sequence:

>372_bases
ATGTCCAGAAAACAGGTCTTTGGCGCATCGCATGTGCCTCTATCCCCCGCTGTCCGCGTAGGCGACATGGTTTACGTTTC
GGGCCAGGTGCCAGTCGGGCCGAATGGCCAGATCGTCGAAGGCGGCATCGAAGCACAGCCCCGGCAGGTGCTTGAAAACA
TCAAGGCCGCGCTAGCGCTGGCGGGTGCAGCGATGGAAGACGTCGTAAAAACCACGGTCTGGCTGGAAGATGCGCGCGAT
TTCGGTCGCATGAACGCTGTCTATGGCACTTATTTTCCAAAAGAACCGCCCGCACGCACCACGGTCGAATCCCGCCTGAT
GATCGACATCAAGATCGAAATCGAAGCCGTCGCCTACGCACCCCAGAAATAA

Upstream 100 bases:

>100_bases
CTTCCTCGCCACCCTGCCCGTCGCCATTCTTTTCATCTGGCTTCAGCGTTATCTCATCAAGGGTCTTGCGCTGGGAGCCG
TCAAATAAACGGAGAGTTTC

Downstream 100 bases:

>100_bases
ATAAGCCCTCGCCGAGAGTTGTTTCCATGCGCATCTTCACCGCGTCGCTTGCGACCGAAACTAACACCTTCTCCCCGGTT
CCAACCGATCGCGCCTCGTT

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 122

Protein sequence:

>123_residues
MSRKQVFGASHVPLSPAVRVGDMVYVSGQVPVGPNGQIVEGGIEAQPRQVLENIKAALALAGAAMEDVVKTTVWLEDARD
FGRMNAVYGTYFPKEPPARTTVESRLMIDIKIEIEAVAYAPQK

Sequences:

>Translated_123_residues
MSRKQVFGASHVPLSPAVRVGDMVYVSGQVPVGPNGQIVEGGIEAQPRQVLENIKAALALAGAAMEDVVKTTVWLEDARD
FGRMNAVYGTYFPKEPPARTTVESRLMIDIKIEIEAVAYAPQK
>Mature_122_residues
SRKQVFGASHVPLSPAVRVGDMVYVSGQVPVGPNGQIVEGGIEAQPRQVLENIKAALALAGAAMEDVVKTTVWLEDARDF
GRMNAVYGTYFPKEPPARTTVESRLMIDIKIEIEAVAYAPQK

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=108, Percent_Identity=42.5925925925926, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI87082396, Length=110, Percent_Identity=44.5454545454545, Blast_Score=90, Evalue=5e-20,
Organism=Escherichia coli, GI87082213, Length=110, Percent_Identity=39.0909090909091, Blast_Score=82, Evalue=8e-18,
Organism=Escherichia coli, GI1787245, Length=109, Percent_Identity=30.2752293577982, Blast_Score=62, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI25148896, Length=110, Percent_Identity=43.6363636363636, Blast_Score=74, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71982075, Length=110, Percent_Identity=43.6363636363636, Blast_Score=74, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71982068, Length=110, Percent_Identity=43.6363636363636, Blast_Score=74, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6320899, Length=102, Percent_Identity=36.2745098039216, Blast_Score=86, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6322138, Length=105, Percent_Identity=35.2380952380952, Blast_Score=85, Evalue=2e-18,
Organism=Drosophila melanogaster, GI19921376, Length=108, Percent_Identity=37.962962962963, Blast_Score=72, Evalue=9e-14,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13312; Mature: 13180

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRKQVFGASHVPLSPAVRVGDMVYVSGQVPVGPNGQIVEGGIEAQPRQVLENIKAALAL
CCCCCCCCCCCCCCCCCEEECCEEEECCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHH
AGAAMEDVVKTTVWLEDARDFGRMNAVYGTYFPKEPPARTTVESRLMIDIKIEIEAVAYA
HHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCEEEEEEEEEEEEEEEC
PQK
CCC
>Mature Secondary Structure 
SRKQVFGASHVPLSPAVRVGDMVYVSGQVPVGPNGQIVEGGIEAQPRQVLENIKAALAL
CCCCCCCCCCCCCCCCEEECCEEEECCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHH
AGAAMEDVVKTTVWLEDARDFGRMNAVYGTYFPKEPPARTTVESRLMIDIKIEIEAVAYA
HHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCEEEEEEEEEEEEEEEC
PQK
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]