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The map label for this gene is ydaM [H]

Identifier: 225686403

GI number: 225686403

Start: 584782

End: 585495

Strand: Reverse

Name: ydaM [H]

Synonym: BMEA_B0594

Alternate gene names: 225686403

Gene position: 585495-584782 (Counterclockwise)

Preceding gene: 225686404

Following gene: 225686402

Centisome position: 49.39

GC content: 50.14

Gene sequence:

>714_bases
TTGCAATTACCATCGGGTAATGTTTGGAGGCGCACGGTAATTGTAGCCGTGATAGCAACGATCATATCGATATCGTTGTC
GACCGGGATTCGTTTCGCGCTTGGAGTGAAATCTGACACGGTTACGATCTTGGTCAGGTTGCTGTTGCCGTTTCTGATTG
CAATGCTGTTGGGGGTTTTCTGGTTTTCACGATTAGAAGAGCTGGAGCGGTCTTATCGGACCGCGGTCAAAAGAGCCAAT
GAGCTGGCGCGGGTGGCGAGTGTCGATCCGCTAACGGGCCTGCTTAACCGTCGGAGCTTCATCCAGCAGTTTAATGCTGC
AAATAAGGCGGGTGTTCGTGGTTGGTTTTTAATCGTAGACGTTGATTATCTGAAGCAGATCAATGACCAATATGGCCATC
CAGCCGGCGACGATGCGATAATCGCGGTAGCTCAAGCATTGGAAGATTGTTTATCCAGCGACAGCCTGATTGCTCGCATC
GGTGGTGACGAATTCTGTGCATTCGTACCGAAGGGAGCGATCAACGACGTTGATAGCGTTCTTTCGGACATCAGTTTGAG
AGCAGATGGGCTGCTGCGGGAGAAAAGGCCCAATGTCGGAAGTTCTTTGACTGTTTCAGTCGGCCGCATCTCCTGTAAGA
CAGGGCAGATATTCGAGGAAGTCCTGTCAATCGCGGATGAACAACTCTATCGAAAGAAAAGTCAAAGGCAGTAA

Upstream 100 bases:

>100_bases
ACGGACCAGTAAATATAAAGGCAGCTACATTATGTTGGTTGCAGTAACAATTGGTAGGCGTTAATCCGTCAGGGGTTTCC
TCTCCTAAAGGATGGCTGGT

Downstream 100 bases:

>100_bases
TGATATTTAGAGCGAGGCTCCCGAAAGTGGGAACCGTCTCTGCGAGGAAATCAGTTCACCGGGATGATTTCTGATCCCGT
TTCGATGCGTTGGAAAATGC

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MQLPSGNVWRRTVIVAVIATIISISLSTGIRFALGVKSDTVTILVRLLLPFLIAMLLGVFWFSRLEELERSYRTAVKRAN
ELARVASVDPLTGLLNRRSFIQQFNAANKAGVRGWFLIVDVDYLKQINDQYGHPAGDDAIIAVAQALEDCLSSDSLIARI
GGDEFCAFVPKGAINDVDSVLSDISLRADGLLREKRPNVGSSLTVSVGRISCKTGQIFEEVLSIADEQLYRKKSQRQ

Sequences:

>Translated_237_residues
MQLPSGNVWRRTVIVAVIATIISISLSTGIRFALGVKSDTVTILVRLLLPFLIAMLLGVFWFSRLEELERSYRTAVKRAN
ELARVASVDPLTGLLNRRSFIQQFNAANKAGVRGWFLIVDVDYLKQINDQYGHPAGDDAIIAVAQALEDCLSSDSLIARI
GGDEFCAFVPKGAINDVDSVLSDISLRADGLLREKRPNVGSSLTVSVGRISCKTGQIFEEVLSIADEQLYRKKSQRQ
>Mature_237_residues
MQLPSGNVWRRTVIVAVIATIISISLSTGIRFALGVKSDTVTILVRLLLPFLIAMLLGVFWFSRLEELERSYRTAVKRAN
ELARVASVDPLTGLLNRRSFIQQFNAANKAGVRGWFLIVDVDYLKQINDQYGHPAGDDAIIAVAQALEDCLSSDSLIARI
GGDEFCAFVPKGAINDVDSVLSDISLRADGLLREKRPNVGSSLTVSVGRISCKTGQIFEEVLSIADEQLYRKKSQRQ

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=170, Percent_Identity=31.7647058823529, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1786584, Length=231, Percent_Identity=28.5714285714286, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI145693134, Length=147, Percent_Identity=33.3333333333333, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1787262, Length=242, Percent_Identity=24.3801652892562, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787056, Length=162, Percent_Identity=30.2469135802469, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI87082007, Length=219, Percent_Identity=28.7671232876712, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI87081974, Length=182, Percent_Identity=26.9230769230769, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1788956, Length=182, Percent_Identity=30.7692307692308, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787541, Length=167, Percent_Identity=31.1377245508982, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787802, Length=161, Percent_Identity=30.4347826086957, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1788381, Length=98, Percent_Identity=36.734693877551, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 26082; Mature: 26082

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLPSGNVWRRTVIVAVIATIISISLSTGIRFALGVKSDTVTILVRLLLPFLIAMLLGVF
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
WFSRLEELERSYRTAVKRANELARVASVDPLTGLLNRRSFIQQFNAANKAGVRGWFLIVD
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE
VDYLKQINDQYGHPAGDDAIIAVAQALEDCLSSDSLIARIGGDEFCAFVPKGAINDVDSV
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHCCCCCHHHHHHH
LSDISLRADGLLREKRPNVGSSLTVSVGRISCKTGQIFEEVLSIADEQLYRKKSQRQ
HHHHHHHHHHHHHHCCCCCCCEEEEEECEEECCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQLPSGNVWRRTVIVAVIATIISISLSTGIRFALGVKSDTVTILVRLLLPFLIAMLLGVF
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
WFSRLEELERSYRTAVKRANELARVASVDPLTGLLNRRSFIQQFNAANKAGVRGWFLIVD
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE
VDYLKQINDQYGHPAGDDAIIAVAQALEDCLSSDSLIARIGGDEFCAFVPKGAINDVDSV
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHCCCCCHHHHHHH
LSDISLRADGLLREKRPNVGSSLTVSVGRISCKTGQIFEEVLSIADEQLYRKKSQRQ
HHHHHHHHHHHHHHCCCCCCCEEEEEECEEECCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]