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The map label for this gene is araQ [H]

Identifier: 225686312

GI number: 225686312

Start: 478444

End: 479283

Strand: Direct

Name: araQ [H]

Synonym: BMEA_B0493

Alternate gene names: 225686312

Gene position: 478444-479283 (Clockwise)

Preceding gene: 225686311

Following gene: 225686313

Centisome position: 40.36

GC content: 54.64

Gene sequence:

>840_bases
ATGTCGAAAGCACGCACTTCACCCGTTCGTACCGCACTCGTTCACGCGACCCTGATCTTCTATATGTTGATCGCCGTGTT
TCCGGTGGCGCTGACGCTGATCAATTCCTTCAAGAGCCGCAATGCGATCTTCCGTGAGCCGTTGCGGTTTCCTACGCCGG
AAAGCTTTAGCCTCATCGGTTATGAAACCGTTCTGAAGCAAGGTTCGTTCCTGACCTATTTCCAGAACAGCGCAATTGTC
ACGGTTGTCAGTATTTTTCTCGTCATCCTGTTTGGCGCGATGGCGGCCTTCGCGCTCGCCGAATATCGTTTCCGCGGCAA
TATGCTGACCGGGCTCTATCTGGCAATCGGCATTATGATCCCGATCCGGCTTGGCACGGTCGCACTGTTGCAGGGAATGG
TTGCAGCAGGGCTGGTCAATACGCTGACGGCACTCATACTTGTCTATACGGCGCAAGGGTTGCCGCTTGCGATCTTCATT
CTCTCCGAGTTCATGCGAACCGTTTCGGATGACTTGAAAAATGCCGGGCGAATAGATGGCATGTCGGAATATGCGATCTT
CTTCAAGCTGGTGTTGCCGCTGATCCGTCCCGCCATGGCTACCGTCGCCGTCTTTACCATGATCCCGATCTGGAATGATC
TCTGGTTCCCGCTCATCCTCGCGCCCAGCGAGGCCACCAAGACCGTTACGCTTGGCGCACAGCTTTTCATCGGTCAGTTC
GTCACCAACTGGAATGCAGTCCTCGCGGCCCTGTCATTGGCGATGTTCCCGATCCTCATTCTCTATGTTCTCTTCTCGCG
GCAGTTGATCCGTGGCATTACGGCTGGAGCGGTAAAATGA

Upstream 100 bases:

>100_bases
CGCCGCGGTGATGTTCCTCATCATTCTGGCCGGTGTGTCGCTCTATCTGTTCGGCATCCAGCGCCGTATGCGCCGCTATC
AGTTCTGAGGAGCGAGTACC

Downstream 100 bases:

>100_bases
GTTCAGAAAATCAGGCTCCTGTTCGCGTTCTTTCAGCCGGCCTCGGCAATATGGGCCGCAGCCATGCCCTTGCCTATCAC
CGCAATCCGGGTTTTGAAAT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 278

Protein sequence:

>279_residues
MSKARTSPVRTALVHATLIFYMLIAVFPVALTLINSFKSRNAIFREPLRFPTPESFSLIGYETVLKQGSFLTYFQNSAIV
TVVSIFLVILFGAMAAFALAEYRFRGNMLTGLYLAIGIMIPIRLGTVALLQGMVAAGLVNTLTALILVYTAQGLPLAIFI
LSEFMRTVSDDLKNAGRIDGMSEYAIFFKLVLPLIRPAMATVAVFTMIPIWNDLWFPLILAPSEATKTVTLGAQLFIGQF
VTNWNAVLAALSLAMFPILILYVLFSRQLIRGITAGAVK

Sequences:

>Translated_279_residues
MSKARTSPVRTALVHATLIFYMLIAVFPVALTLINSFKSRNAIFREPLRFPTPESFSLIGYETVLKQGSFLTYFQNSAIV
TVVSIFLVILFGAMAAFALAEYRFRGNMLTGLYLAIGIMIPIRLGTVALLQGMVAAGLVNTLTALILVYTAQGLPLAIFI
LSEFMRTVSDDLKNAGRIDGMSEYAIFFKLVLPLIRPAMATVAVFTMIPIWNDLWFPLILAPSEATKTVTLGAQLFIGQF
VTNWNAVLAALSLAMFPILILYVLFSRQLIRGITAGAVK
>Mature_278_residues
SKARTSPVRTALVHATLIFYMLIAVFPVALTLINSFKSRNAIFREPLRFPTPESFSLIGYETVLKQGSFLTYFQNSAIVT
VVSIFLVILFGAMAAFALAEYRFRGNMLTGLYLAIGIMIPIRLGTVALLQGMVAAGLVNTLTALILVYTAQGLPLAIFIL
SEFMRTVSDDLKNAGRIDGMSEYAIFFKLVLPLIRPAMATVAVFTMIPIWNDLWFPLILAPSEATKTVTLGAQLFIGQFV
TNWNAVLAALSLAMFPILILYVLFSRQLIRGITAGAVK

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=273, Percent_Identity=29.6703296703297, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1789860, Length=277, Percent_Identity=23.826714801444, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790464, Length=304, Percent_Identity=24.3421052631579, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30629; Mature: 30498

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKARTSPVRTALVHATLIFYMLIAVFPVALTLINSFKSRNAIFREPLRFPTPESFSLIG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCHHHH
YETVLKQGSFLTYFQNSAIVTVVSIFLVILFGAMAAFALAEYRFRGNMLTGLYLAIGIMI
HHHHHHCCCEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
PIRLGTVALLQGMVAAGLVNTLTALILVYTAQGLPLAIFILSEFMRTVSDDLKNAGRIDG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
MSEYAIFFKLVLPLIRPAMATVAVFTMIPIWNDLWFPLILAPSEATKTVTLGAQLFIGQF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHH
VTNWNAVLAALSLAMFPILILYVLFSRQLIRGITAGAVK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SKARTSPVRTALVHATLIFYMLIAVFPVALTLINSFKSRNAIFREPLRFPTPESFSLIG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCHHHH
YETVLKQGSFLTYFQNSAIVTVVSIFLVILFGAMAAFALAEYRFRGNMLTGLYLAIGIMI
HHHHHHCCCEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
PIRLGTVALLQGMVAAGLVNTLTALILVYTAQGLPLAIFILSEFMRTVSDDLKNAGRIDG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
MSEYAIFFKLVLPLIRPAMATVAVFTMIPIWNDLWFPLILAPSEATKTVTLGAQLFIGQF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHH
VTNWNAVLAALSLAMFPILILYVLFSRQLIRGITAGAVK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]