Click here to switch to the map view.

The map label for this gene is potC [H]

Identifier: 225686168

GI number: 225686168

Start: 308789

End: 309565

Strand: Direct

Name: potC [H]

Synonym: BMEA_B0329

Alternate gene names: 225686168

Gene position: 308789-309565 (Clockwise)

Preceding gene: 225686167

Following gene: 225686169

Centisome position: 26.05

GC content: 57.79

Gene sequence:

>777_bases
ATGGGGCGTGTTGCAAAAATTCTTTTCGGTGTTGCGGCAGTCGTTTTTCTGGTCGCACCGCTTTTCGCCATCCTGCCGCT
CGCCTTCACCTCCAGCGTGTTCCTGACCTATCCCGTTCCCGGCTGGTCGGTTCGCTGGTTCGAGGAATTGACAACGGCGG
AGGTGTGGCGACGGGCAATCGTCAACAGCCTGATTATCGGTTTTGGAACCATGGCGCTTGCAACGGTTCTGGGCACGATG
GCGGCACTTGGCCTGCGTACACGCGGGCTTTTCCTCTCAGGGCCAATCCGCACGCTCTTTCTTCTGCCAATGGTGGTTCC
AGCGGTGGTGCTGGGCGTTGGCATGCAGCTTTTTTTCGTCCGTCTCGATATCGCCAATTCCTATTTCGGCGTTATCGTTG
CGCATACGGTCGTGTCCATCCCCTTCGTGCTTGTCAGCGTGAGTGGTGCACTTGCCGGTATTGACAGGCGTTTGGAACTT
GCAGCCGAAAGTCTTGGTGCTGCTCCGCTCACGGTCTTCCGCAAGATCACGCTGCCGCTCGCCATGCCCGGCATCGCATC
AGGTGGGGTTCTGGCTTTTGCCACATCGCTTGATGAAGTGGTGCTGACCCTTTTCGTGGCAGGCCCCAACCAGCGTACAT
TGGCGCGGCAGATGTTCTCTACCATTCGCGAGAATATCAGTCCGGCCATTGCAGCTGCTGCATTCCTGTTTATCTCCGGT
ACGGTGCTGATCGGCCTTGCGGCCGTGCTTTTCAAAGGTCGCGCCAGCCCGCAATAA

Upstream 100 bases:

>100_bases
GCATGGCCGGTGCTTTGGGGCTTGTGCTGCTCGTCGCCTGTCTCATCCTTTATGCCGTTTACGGACGCTTGACCGCCGAT
GACGAGGGGAGGGCGTGACA

Downstream 100 bases:

>100_bases
AGGGCGCCGCGTTTTATCATACGACATGCTCCAACTCACTTCGCGATTTGCTCCGGCATAGCCGGAGGCTTCGCGGAGTG
CGTTAATTCGCCTCTACACT

Product: binding-protein-dependent transport systems inner membrane component

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MGRVAKILFGVAAVVFLVAPLFAILPLAFTSSVFLTYPVPGWSVRWFEELTTAEVWRRAIVNSLIIGFGTMALATVLGTM
AALGLRTRGLFLSGPIRTLFLLPMVVPAVVLGVGMQLFFVRLDIANSYFGVIVAHTVVSIPFVLVSVSGALAGIDRRLEL
AAESLGAAPLTVFRKITLPLAMPGIASGGVLAFATSLDEVVLTLFVAGPNQRTLARQMFSTIRENISPAIAAAAFLFISG
TVLIGLAAVLFKGRASPQ

Sequences:

>Translated_258_residues
MGRVAKILFGVAAVVFLVAPLFAILPLAFTSSVFLTYPVPGWSVRWFEELTTAEVWRRAIVNSLIIGFGTMALATVLGTM
AALGLRTRGLFLSGPIRTLFLLPMVVPAVVLGVGMQLFFVRLDIANSYFGVIVAHTVVSIPFVLVSVSGALAGIDRRLEL
AAESLGAAPLTVFRKITLPLAMPGIASGGVLAFATSLDEVVLTLFVAGPNQRTLARQMFSTIRENISPAIAAAAFLFISG
TVLIGLAAVLFKGRASPQ
>Mature_257_residues
GRVAKILFGVAAVVFLVAPLFAILPLAFTSSVFLTYPVPGWSVRWFEELTTAEVWRRAIVNSLIIGFGTMALATVLGTMA
ALGLRTRGLFLSGPIRTLFLLPMVVPAVVLGVGMQLFFVRLDIANSYFGVIVAHTVVSIPFVLVSVSGALAGIDRRLELA
AESLGAAPLTVFRKITLPLAMPGIASGGVLAFATSLDEVVLTLFVAGPNQRTLARQMFSTIRENISPAIAAAAFLFISGT
VLIGLAAVLFKGRASPQ

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=198, Percent_Identity=33.8383838383838, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1787081, Length=250, Percent_Identity=36.8, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1787714, Length=206, Percent_Identity=33.0097087378641, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786980, Length=115, Percent_Identity=40.8695652173913, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 27246; Mature: 27115

Theoretical pI: Translated: 11.77; Mature: 11.77

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
GRVAKILFGVAAVVFLVAPLFAILPLAFTSSVFLTYPVPGWSVRWFEELTTAEVWRRAI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
VNSLIIGFGTMALATVLGTMAALGLRTRGLFLSGPIRTLFLLPMVVPAVVLGVGMQLFFV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
RLDIANSYFGVIVAHTVVSIPFVLVSVSGALAGIDRRLELAAESLGAAPLTVFRKITLPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
AMPGIASGGVLAFATSLDEVVLTLFVAGPNQRTLARQMFSTIRENISPAIAAAAFLFISG
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
TVLIGLAAVLFKGRASPQ
HHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]