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The map label for this gene is rimM

Identifier: 225630985

GI number: 225630985

Start: 1397419

End: 1397925

Strand: Reverse

Name: rimM

Synonym: WRi_013090

Alternate gene names: 225630985

Gene position: 1397925-1397419 (Counterclockwise)

Preceding gene: 225630986

Following gene: 225630984

Centisome position: 96.68

GC content: 31.76

Gene sequence:

>507_bases
ATGAACGACAATCTGGTATGCTTAGGAATTATTACCTCTCCTCACGGAATTAAAGGAGCTGTTAAAGTAAAAACCTTTAC
TGAAAAGCCTGAAAATATCTCCTTATATGGTAAGCTAATAAGTGGTGATGAGAATTATAAAATAGACTCAGTATCCGTCA
TAGGTGATAATTTAGTAATAGCTACAATAAGCGGAGTAAATTCCCGTAATGAAGCAGAGCTTTTAAGGAATAAGAAGCTA
TATATAGAAAGAAGCAAGTTACCAGAGCTAAATGATGAGGATGAATTTTACCAAAGTGACCTTGTAGATATGGAAGTAAG
GCTGAAAAGTAATGAATTATATGGCTATGTAAAATCTGTGTATAATTTCGGCTCAGGGGATATATTAGAAATTTTAGTTA
TCAGCACAAAAAAACGTATTATGCTGTCTTTCACTAAAGAGATATTTCCACATATAAATATAAAGGGGAGGTATATAGTA
TTAAATATACCAGAATTTATTGACTAA

Upstream 100 bases:

>100_bases
TACCTCCACTCATTATCACTGAAAAAGAGATTGATGAAGGCATCGAGATTTTGACTCAATATTTATCTGAGAAATCTTCT
GATTAGATACTTGCATTAAT

Downstream 100 bases:

>100_bases
TAAAGACTTTGATATTTATATAAAGCTATTTATAATTGTAAGATCAAACTGAAAATGTAATTATGGCAGAAAGAGCTAAC
GACATTAGACCAGGTCAGGT

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MNDNLVCLGIITSPHGIKGAVKVKTFTEKPENISLYGKLISGDENYKIDSVSVIGDNLVIATISGVNSRNEAELLRNKKL
YIERSKLPELNDEDEFYQSDLVDMEVRLKSNELYGYVKSVYNFGSGDILEILVISTKKRIMLSFTKEIFPHINIKGRYIV
LNIPEFID

Sequences:

>Translated_168_residues
MNDNLVCLGIITSPHGIKGAVKVKTFTEKPENISLYGKLISGDENYKIDSVSVIGDNLVIATISGVNSRNEAELLRNKKL
YIERSKLPELNDEDEFYQSDLVDMEVRLKSNELYGYVKSVYNFGSGDILEILVISTKKRIMLSFTKEIFPHINIKGRYIV
LNIPEFID
>Mature_168_residues
MNDNLVCLGIITSPHGIKGAVKVKTFTEKPENISLYGKLISGDENYKIDSVSVIGDNLVIATISGVNSRNEAELLRNKKL
YIERSKLPELNDEDEFYQSDLVDMEVRLKSNELYGYVKSVYNFGSGDILEILVISTKKRIMLSFTKEIFPHINIKGRYIV
LNIPEFID

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_WOLPM (Q73FP4)

Other databases:

- EMBL:   AE017196
- RefSeq:   NP_966992.1
- ProteinModelPortal:   Q73FP4
- SMR:   Q73FP4
- EnsemblBacteria:   EBWOLT00000003860
- GeneID:   2738307
- GenomeReviews:   AE017196_GR
- KEGG:   wol:WD1282
- TIGR:   WD_1282
- GeneTree:   EBGT00050000030954
- HOGENOM:   HBG703775
- OMA:   KNILNFG
- ProtClustDB:   PRK14592
- BioCyc:   WPIP955:WD_1282-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 19035; Mature: 19035

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDNLVCLGIITSPHGIKGAVKVKTFTEKPENISLYGKLISGDENYKIDSVSVIGDNLVI
CCCCEEEEEEEECCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCEEEEEEEEECCCEEE
ATISGVNSRNEAELLRNKKLYIERSKLPELNDEDEFYQSDLVDMEVRLKSNELYGYVKSV
EEEECCCCCCHHHHHHCCEEEEEECCCCCCCCCHHHHHHCCEEEEEEEECCHHHHHHHHH
YNFGSGDILEILVISTKKRIMLSFTKEIFPHINIKGRYIVLNIPEFID
HCCCCCCEEEEEEECCCCCEEEEEHHHHCCCCCCCCEEEEEECCHHCC
>Mature Secondary Structure
MNDNLVCLGIITSPHGIKGAVKVKTFTEKPENISLYGKLISGDENYKIDSVSVIGDNLVI
CCCCEEEEEEEECCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCEEEEEEEEECCCEEE
ATISGVNSRNEAELLRNKKLYIERSKLPELNDEDEFYQSDLVDMEVRLKSNELYGYVKSV
EEEECCCCCCHHHHHHCCEEEEEECCCCCCCCCHHHHHHCCEEEEEEEECCHHHHHHHHH
YNFGSGDILEILVISTKKRIMLSFTKEIFPHINIKGRYIVLNIPEFID
HCCCCCCEEEEEEECCCCCEEEEEHHHHCCCCCCCCEEEEEECCHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA