Click here to switch to the map view.

The map label for this gene is ybjT [H]

Identifier: 225630980

GI number: 225630980

Start: 1387418

End: 1388368

Strand: Direct

Name: ybjT [H]

Synonym: WRi_013020

Alternate gene names: 225630980

Gene position: 1387418-1388368 (Clockwise)

Preceding gene: 225630979

Following gene: 225630981

Centisome position: 95.96

GC content: 32.6

Gene sequence:

>951_bases
GTGACAAAACGTGTAATTATTTTTGGTGGAACGGGGTTTATAGGGAAACACATCGTAAGACGCTTGGCAGCAGAAGGATA
TTTAATAAAGATATTCACTCGTAATCAGGAAAAAGCTGCTTGTTTAAAATTGTGTGGCAATTTAGGACAAATATCAATAT
TTAAAGGCGATTTTTTTGATGAAAAATCAGTTCTGGAGGGTATGGAAGAATGTGATGTAGCTATAAACTTAGTGGGAATA
TTATATGAAGCAAAAAAGCACGATTTTTACGCTGTTCACGTTAAAATAGCTGAAAGGATAGCAAAAGCTGCAAAAATGAA
AAATGTACCTATGATGATACATTTTTCTGCTATGGGAATAGAAAATAGCAAGTTGTCAAAATATGCCAAAAGTAAATTGG
AAGGTGAAAAAGCTGTAACTTCAGCATTTCAAAAAGCAATAATAATTAGGCCAAGCCTTGTATTTGGTAAAGAAGACAAC
TTCTTTAATAAATTTGCAAGATTAGCAACTATTCTTCCTTTCTTACCACTAATTGGCAATGGAACAACTAAATTTCAGCC
AATATGTGTAACAGACTTAGCTGAAGTGGTATATCGTATTATCAGTTTTAATAAGCAAGACAAGAAAATTTATAACATGG
GTGGACCAAAGGTTTACTCTTTCAAAAGCTTATTGAAGTTTATTCTGAATGTTACTAACAGAAAGTGTTTGTTGATCAAT
GTATCTTTTCCAATGGCAAAGTTAATAGCTTTCTTTTTAGAAAATAAAATTATTTCTATGCTGCTAAAACCAATAACCGG
AGATACGAACCCTATGCTTACTCAAGATCAGGTGAAAGTTATGATGAATAGTTCAATCGAAAAGTCAGTTGACCTTGAAA
CAATGAAGGTTCGACCATTAGCAATTGAAAATGTGGTGCCAGAGTACTTGAAGATTTATAGAAAGTATTGA

Upstream 100 bases:

>100_bases
GAGGAATGAAAATGGATCTTATTGTACGGGAATTCGTAATAAAATATTAAGCGAAATCATTGTATTAATTTACAGTAACA
AATTATTAGGAACTTTAATT

Downstream 100 bases:

>100_bases
TAAAAGAGTGTGCCCGGTGGGATTCGAACCTACGACCCACAGCTTAGAAGGCTGTTGCTCTATCCAGCTGAGCTACGGGC
ACACAACATATATAAAATGC

Product: NADH-ubiquinone oxidoreductase, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 315

Protein sequence:

>316_residues
MTKRVIIFGGTGFIGKHIVRRLAAEGYLIKIFTRNQEKAACLKLCGNLGQISIFKGDFFDEKSVLEGMEECDVAINLVGI
LYEAKKHDFYAVHVKIAERIAKAAKMKNVPMMIHFSAMGIENSKLSKYAKSKLEGEKAVTSAFQKAIIIRPSLVFGKEDN
FFNKFARLATILPFLPLIGNGTTKFQPICVTDLAEVVYRIISFNKQDKKIYNMGGPKVYSFKSLLKFILNVTNRKCLLIN
VSFPMAKLIAFFLENKIISMLLKPITGDTNPMLTQDQVKVMMNSSIEKSVDLETMKVRPLAIENVVPEYLKIYRKY

Sequences:

>Translated_316_residues
MTKRVIIFGGTGFIGKHIVRRLAAEGYLIKIFTRNQEKAACLKLCGNLGQISIFKGDFFDEKSVLEGMEECDVAINLVGI
LYEAKKHDFYAVHVKIAERIAKAAKMKNVPMMIHFSAMGIENSKLSKYAKSKLEGEKAVTSAFQKAIIIRPSLVFGKEDN
FFNKFARLATILPFLPLIGNGTTKFQPICVTDLAEVVYRIISFNKQDKKIYNMGGPKVYSFKSLLKFILNVTNRKCLLIN
VSFPMAKLIAFFLENKIISMLLKPITGDTNPMLTQDQVKVMMNSSIEKSVDLETMKVRPLAIENVVPEYLKIYRKY
>Mature_315_residues
TKRVIIFGGTGFIGKHIVRRLAAEGYLIKIFTRNQEKAACLKLCGNLGQISIFKGDFFDEKSVLEGMEECDVAINLVGIL
YEAKKHDFYAVHVKIAERIAKAAKMKNVPMMIHFSAMGIENSKLSKYAKSKLEGEKAVTSAFQKAIIIRPSLVFGKEDNF
FNKFARLATILPFLPLIGNGTTKFQPICVTDLAEVVYRIISFNKQDKKIYNMGGPKVYSFKSLLKFILNVTNRKCLLINV
SFPMAKLIAFFLENKIISMLLKPITGDTNPMLTQDQVKVMMNSSIEKSVDLETMKVRPLAIENVVPEYLKIYRKY

Specific function: Unknown

COG id: COG0702

COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI6681764, Length=315, Percent_Identity=30.4761904761905, Blast_Score=133, Evalue=2e-31,
Organism=Escherichia coli, GI87081793, Length=260, Percent_Identity=21.5384615384615, Blast_Score=75, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17556106, Length=235, Percent_Identity=29.3617021276596, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24667554, Length=323, Percent_Identity=29.7213622291022, Blast_Score=128, Evalue=5e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021295
- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF11066 DUF2867; PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 35733; Mature: 35602

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKRVIIFGGTGFIGKHIVRRLAAEGYLIKIFTRNQEKAACLKLCGNLGQISIFKGDFFD
CCCEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHCCCCEEEEEECCCCC
EKSVLEGMEECDVAINLVGILYEAKKHDFYAVHVKIAERIAKAAKMKNVPMMIHFSAMGI
HHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEEEECCC
ENSKLSKYAKSKLEGEKAVTSAFQKAIIIRPSLVFGKEDNFFNKFARLATILPFLPLIGN
CHHHHHHHHHHHHCCHHHHHHHHHHHEEECCCEEECCCCCHHHHHHHHHHHHHHHHHCCC
GTTKFQPICVTDLAEVVYRIISFNKQDKKIYNMGGPKVYSFKSLLKFILNVTNRKCLLIN
CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEE
VSFPMAKLIAFFLENKIISMLLKPITGDTNPMLTQDQVKVMMNSSIEKSVDLETMKVRPL
ECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHCCCCCEEECCH
AIENVVPEYLKIYRKY
HHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TKRVIIFGGTGFIGKHIVRRLAAEGYLIKIFTRNQEKAACLKLCGNLGQISIFKGDFFD
CCEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHCCCCEEEEEECCCCC
EKSVLEGMEECDVAINLVGILYEAKKHDFYAVHVKIAERIAKAAKMKNVPMMIHFSAMGI
HHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEEEECCC
ENSKLSKYAKSKLEGEKAVTSAFQKAIIIRPSLVFGKEDNFFNKFARLATILPFLPLIGN
CHHHHHHHHHHHHCCHHHHHHHHHHHEEECCCEEECCCCCHHHHHHHHHHHHHHHHHCCC
GTTKFQPICVTDLAEVVYRIISFNKQDKKIYNMGGPKVYSFKSLLKFILNVTNRKCLLIN
CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEE
VSFPMAKLIAFFLENKIISMLLKPITGDTNPMLTQDQVKVMMNSSIEKSVDLETMKVRPL
ECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHCCCCCEEECCH
AIENVVPEYLKIYRKY
HHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]