Click here to switch to the map view.

The map label for this gene is ptlF [H]

Identifier: 225630957

GI number: 225630957

Start: 1367497

End: 1368279

Strand: Reverse

Name: ptlF [H]

Synonym: WRi_012790

Alternate gene names: 225630957

Gene position: 1368279-1367497 (Counterclockwise)

Preceding gene: 225630958

Following gene: 225630951

Centisome position: 94.63

GC content: 34.87

Gene sequence:

>783_bases
ATGATTGGTTTACTGTTTGCCGTACTGTTGTTCCTCTGTGGTAGTGATGCACTTGCAAAACAGGAGCCACGTTCAATAGC
TGGAGATAATCACATAAAGGTCATAAATTATAACCCACAAGCCATACATAAGTATACGGGTTTTTATGGTTATCAGTCCA
GTATATTGTTTGAACCAGGGGAGGTAATACAAAACCTTTCAATGGGTGATTCAACTGGTTGGCAACTCCTTCCTCAAGGT
AACAGATTGTTTATTAAGCCTATAGATGATATTGCCGATACTAACACAACTATAATTACCAATAAAAGAGTTTATTACTT
TGAATTTCATGCTGAAGAAGCAACTGGACTAGATGATCCAAGATTAGCATATGAAGTAAGGTTTCTTTATCCACTATTTA
GCAGTGATGAGATTTACACAACAAATAACGGTGATATCCTCGAACAAGCTAGTCATACCATTATTCCTGATATAAACGAT
ATTGAAGTTGTAAAGAAGGGTTTAAATTTTAATTATTCCATCTCGCACGTTAAAGGCAGTCAGTCAATAATACCAATCAA
GGTTTTTGATGATGGAAAATTTACATATCTACAATTCAATAAAATAAACTCTGATTTCCCGGCAGTTTTTATGGTTGATT
CTGCAGGATATGAGTCTTTAGTAAATTTCCGTACAGTTGATAACTACCTGATAATCGAAAGGGTAAGTTCAGTGTTTACC
TTAAGGAATGGATCGAGTACAGTTTGCCTATTTAATGAAACCATACCTTTCAAAAAAGGGTAA

Upstream 100 bases:

>100_bases
TTTCTACCGCTTGCTTTGGGGTTTATAGTATAGAAAGTGCCTTAACAGTTGCAGTGCATGTCTATCAATGATAAAATAAA
GATTAATTTATTTTGATATT

Downstream 100 bases:

>100_bases
AGGCTATAATGCCCGAGATATGGGTGCAAAATTTCTTCTATGATGTTCTGTAATTCCATAAAGGCCAATAGCGTTAAGGT
GCTCTTTTGTCCCATATCCT

Product: Type IV secretion system protein VirB9, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MIGLLFAVLLFLCGSDALAKQEPRSIAGDNHIKVINYNPQAIHKYTGFYGYQSSILFEPGEVIQNLSMGDSTGWQLLPQG
NRLFIKPIDDIADTNTTIITNKRVYYFEFHAEEATGLDDPRLAYEVRFLYPLFSSDEIYTTNNGDILEQASHTIIPDIND
IEVVKKGLNFNYSISHVKGSQSIIPIKVFDDGKFTYLQFNKINSDFPAVFMVDSAGYESLVNFRTVDNYLIIERVSSVFT
LRNGSSTVCLFNETIPFKKG

Sequences:

>Translated_260_residues
MIGLLFAVLLFLCGSDALAKQEPRSIAGDNHIKVINYNPQAIHKYTGFYGYQSSILFEPGEVIQNLSMGDSTGWQLLPQG
NRLFIKPIDDIADTNTTIITNKRVYYFEFHAEEATGLDDPRLAYEVRFLYPLFSSDEIYTTNNGDILEQASHTIIPDIND
IEVVKKGLNFNYSISHVKGSQSIIPIKVFDDGKFTYLQFNKINSDFPAVFMVDSAGYESLVNFRTVDNYLIIERVSSVFT
LRNGSSTVCLFNETIPFKKG
>Mature_260_residues
MIGLLFAVLLFLCGSDALAKQEPRSIAGDNHIKVINYNPQAIHKYTGFYGYQSSILFEPGEVIQNLSMGDSTGWQLLPQG
NRLFIKPIDDIADTNTTIITNKRVYYFEFHAEEATGLDDPRLAYEVRFLYPLFSSDEIYTTNNGDILEQASHTIIPDIND
IEVVKKGLNFNYSISHVKGSQSIIPIKVFDDGKFTYLQFNKINSDFPAVFMVDSAGYESLVNFRTVDNYLIIERVSSVFT
LRNGSSTVCLFNETIPFKKG

Specific function: Unknown

COG id: COG3504

COG function: function code U; Type IV secretory pathway, VirB9 components

Gene ontology:

Cell location: Cell outer membrane (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbG/virB9 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010258
- InterPro:   IPR014148 [H]

Pfam domain/function: PF03524 CagX [H]

EC number: NA

Molecular weight: Translated: 29333; Mature: 29333

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGLLFAVLLFLCGSDALAKQEPRSIAGDNHIKVINYNPQAIHKYTGFYGYQSSILFEPG
CHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCEEEEEECHHHHHHHCCCCCCCCEEEECCH
EVIQNLSMGDSTGWQLLPQGNRLFIKPIDDIADTNTTIITNKRVYYFEFHAEEATGLDDP
HHHHCCCCCCCCCCEEEECCCEEEEEECHHHCCCCEEEEECCEEEEEEEECCCCCCCCCC
RLAYEVRFLYPLFSSDEIYTTNNGDILEQASHTIIPDINDIEVVKKGLNFNYSISHVKGS
CEEEEEEEEEEECCCCEEEECCCCCHHHHCCCCCCCCCCHHHHHHHCCCCCEEEEEECCC
QSIIPIKVFDDGKFTYLQFNKINSDFPAVFMVDSAGYESLVNFRTVDNYLIIERVSSVFT
CCEEEEEEECCCCEEEEEEECCCCCCCEEEEEECCCCHHHHEEEECCCEEEEEEHHHEEE
LRNGSSTVCLFNETIPFKKG
EECCCCEEEEEECCCCCCCC
>Mature Secondary Structure
MIGLLFAVLLFLCGSDALAKQEPRSIAGDNHIKVINYNPQAIHKYTGFYGYQSSILFEPG
CHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCEEEEEECHHHHHHHCCCCCCCCEEEECCH
EVIQNLSMGDSTGWQLLPQGNRLFIKPIDDIADTNTTIITNKRVYYFEFHAEEATGLDDP
HHHHCCCCCCCCCCEEEECCCEEEEEECHHHCCCCEEEEECCEEEEEEEECCCCCCCCCC
RLAYEVRFLYPLFSSDEIYTTNNGDILEQASHTIIPDINDIEVVKKGLNFNYSISHVKGS
CEEEEEEEEEEECCCCEEEECCCCCHHHHCCCCCCCCCCHHHHHHHCCCCCEEEEEECCC
QSIIPIKVFDDGKFTYLQFNKINSDFPAVFMVDSAGYESLVNFRTVDNYLIIERVSSVFT
CCEEEEEEECCCCEEEEEEECCCCCCCEEEEEECCCCHHHHEEEECCCEEEEEEHHHEEE
LRNGSSTVCLFNETIPFKKG
EECCCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12910271; 3584073 [H]