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The map label for this gene is xerD [H]

Identifier: 225630697

GI number: 225630697

Start: 1062888

End: 1063874

Strand: Reverse

Name: xerD [H]

Synonym: WRi_009900

Alternate gene names: 225630697

Gene position: 1063874-1062888 (Counterclockwise)

Preceding gene: 225630698

Following gene: 225630696

Centisome position: 73.58

GC content: 32.42

Gene sequence:

>987_bases
ATGAAAAATAAACAGTCGCAAAATAAAAAAGAAAATCTTTACATAACATATTACATAGATGCTTTAGCTTCAGAGAGGTT
CGCTGCACAAAATACTCTGGAAAGTTATCGTTCGGATTTACACCAGTTTGAAGAATTTTTATTGGAAAGCGGCACTACCT
TGGTTGGTGTAAACAAAACCAATATTAAAGATTATGTGAAATCTTTATGTACACAAAAAAAATATAAAAGTAGCTCTATA
TCAAGAAAAATATCCGCTATGAAAAATTTTTACAAGTGTCTATTTAATGACGGAATAATAGATTTTAATCCAGCGCCGGC
TAATGATGCTGAATTAAAGAATCCAAAAGTTTCTCGTCCTTTGCCTAAGTATTTAAGTGTCGAAGAAATATTTTTGCTAA
TGGACACAGTGAGAAAATCAGCAAGCGAATCGAATAAAGAGATAAGCAGTAAAAGGCTATGTGCGATTTTAGATATCCTT
TACTCTTCTGGAATGCGTGTTTCTGAACTAATTAGTATGAAATTATGTGAAGTGTCACATTTAATAAACAGTAATAACAA
AGAATGCTATATAATAATAAAAGGAAAAAGTGGTAGAGAGAGGCAAATTCTTTTTAATGAACAAGCATTGCAGAGCCTTA
GAAATTATTTATCAGTTCGTGATAATCTGATCTCTAAAGAAAAGGAATCCGATTGGCTATTCCCAGGTGATAAACCTAAT
AAACCAATTACAAGGCAGAGGGTCGGTCAATTAATGAAGGAGTTGGCAAGAAAATGCAATATTGATGAAAATAAGATCTC
TCCACACGTGATTAGGCATTCTTTTGCTACCCATCTACTAAATAGCGGAGCAAATATTGTGTTGATACAGAAAGTTCTTG
GCCATACTAACCTTTCTACAACACAAATATATACTCATATTGCTAACGAAAAGTTAAAGGACAAATTAGCTGATTCGCAT
CCTATTACTCAGATGATCAATAATTAA

Upstream 100 bases:

>100_bases
CTATTGATAAATGCTTTATTTGTCTCATATTTTCTCATAAGAAACACAGGGAACACTTCTAATCAAATTATAGCCAAAGA
AATAAATATAGGAACTGATA

Downstream 100 bases:

>100_bases
ATTTATTGTTTTTAATTTGTAATAAAGTTAAATTTAAATAAATTTATGTGAGTTTGTGATTTCAAGTTTATTGTTTAATT
TCTTTCTTATATTATGGGAG

Product: site-specific recombinase, phage integrase family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MKNKQSQNKKENLYITYYIDALASERFAAQNTLESYRSDLHQFEEFLLESGTTLVGVNKTNIKDYVKSLCTQKKYKSSSI
SRKISAMKNFYKCLFNDGIIDFNPAPANDAELKNPKVSRPLPKYLSVEEIFLLMDTVRKSASESNKEISSKRLCAILDIL
YSSGMRVSELISMKLCEVSHLINSNNKECYIIIKGKSGRERQILFNEQALQSLRNYLSVRDNLISKEKESDWLFPGDKPN
KPITRQRVGQLMKELARKCNIDENKISPHVIRHSFATHLLNSGANIVLIQKVLGHTNLSTTQIYTHIANEKLKDKLADSH
PITQMINN

Sequences:

>Translated_328_residues
MKNKQSQNKKENLYITYYIDALASERFAAQNTLESYRSDLHQFEEFLLESGTTLVGVNKTNIKDYVKSLCTQKKYKSSSI
SRKISAMKNFYKCLFNDGIIDFNPAPANDAELKNPKVSRPLPKYLSVEEIFLLMDTVRKSASESNKEISSKRLCAILDIL
YSSGMRVSELISMKLCEVSHLINSNNKECYIIIKGKSGRERQILFNEQALQSLRNYLSVRDNLISKEKESDWLFPGDKPN
KPITRQRVGQLMKELARKCNIDENKISPHVIRHSFATHLLNSGANIVLIQKVLGHTNLSTTQIYTHIANEKLKDKLADSH
PITQMINN
>Mature_328_residues
MKNKQSQNKKENLYITYYIDALASERFAAQNTLESYRSDLHQFEEFLLESGTTLVGVNKTNIKDYVKSLCTQKKYKSSSI
SRKISAMKNFYKCLFNDGIIDFNPAPANDAELKNPKVSRPLPKYLSVEEIFLLMDTVRKSASESNKEISSKRLCAILDIL
YSSGMRVSELISMKLCEVSHLINSNNKECYIIIKGKSGRERQILFNEQALQSLRNYLSVRDNLISKEKESDWLFPGDKPN
KPITRQRVGQLMKELARKCNIDENKISPHVIRHSFATHLLNSGANIVLIQKVLGHTNLSTTQIYTHIANEKLKDKLADSH
PITQMINN

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=310, Percent_Identity=34.1935483870968, Blast_Score=175, Evalue=3e-45,
Organism=Escherichia coli, GI1790244, Length=309, Percent_Identity=30.42071197411, Blast_Score=127, Evalue=9e-31,
Organism=Escherichia coli, GI1790767, Length=157, Percent_Identity=28.0254777070064, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 37512; Mature: 37512

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKQSQNKKENLYITYYIDALASERFAAQNTLESYRSDLHQFEEFLLESGTTLVGVNKT
CCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCC
NIKDYVKSLCTQKKYKSSSISRKISAMKNFYKCLFNDGIIDFNPAPANDAELKNPKVSRP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCC
LPKYLSVEEIFLLMDTVRKSASESNKEISSKRLCAILDILYSSGMRVSELISMKLCEVSH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LINSNNKECYIIIKGKSGRERQILFNEQALQSLRNYLSVRDNLISKEKESDWLFPGDKPN
HHCCCCCEEEEEEECCCCCCHHHEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
KPITRQRVGQLMKELARKCNIDENKISPHVIRHSFATHLLNSGANIVLIQKVLGHTNLST
CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEHHHHHCCCCCCH
TQIYTHIANEKLKDKLADSHPITQMINN
HHHHHHHHHHHHHHHHCCCCCHHHHHCC
>Mature Secondary Structure
MKNKQSQNKKENLYITYYIDALASERFAAQNTLESYRSDLHQFEEFLLESGTTLVGVNKT
CCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCC
NIKDYVKSLCTQKKYKSSSISRKISAMKNFYKCLFNDGIIDFNPAPANDAELKNPKVSRP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCC
LPKYLSVEEIFLLMDTVRKSASESNKEISSKRLCAILDILYSSGMRVSELISMKLCEVSH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LINSNNKECYIIIKGKSGRERQILFNEQALQSLRNYLSVRDNLISKEKESDWLFPGDKPN
HHCCCCCEEEEEEECCCCCCHHHEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
KPITRQRVGQLMKELARKCNIDENKISPHVIRHSFATHLLNSGANIVLIQKVLGHTNLST
CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEHHHHHCCCCCCH
TQIYTHIANEKLKDKLADSHPITQMINN
HHHHHHHHHHHHHHHHCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12597275 [H]