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The map label for this gene is ccmH [H]

Identifier: 225630551

GI number: 225630551

Start: 872294

End: 872680

Strand: Reverse

Name: ccmH [H]

Synonym: WRi_008100

Alternate gene names: 225630551

Gene position: 872680-872294 (Counterclockwise)

Preceding gene: 225630552

Following gene: 225630550

Centisome position: 60.36

GC content: 33.07

Gene sequence:

>387_bases
ATGAGAGCAGTAGTTAGTTTACTTTTCATATTGATATTTCACTCAGGCGTAAACGCTTTTACTCTGGATAATAAACTCAG
AGATAAAAGCATGGAAAAACGAGCAACCAGTTTATTTGAAATAATAAGGTGTTCAATATGTTCTGGCGAATCATTGTCTG
AATCTGGATCTCAGATCGCGTATGATATGCGAGAAGCAATTCGTAAAAAAATCAATGATGGATACACAGATGAAGAGATA
ATCTCAGAGTTAAAAAATTCTTACGGCAATTCAATTATAATCGTACCGCCTATAAAATCTAGCACTTACATTTTGTGGTT
TATTCCACTTACAACTCTGCTTATTGGGTGTTTTTTAATACAAAGATACATCAATACAACCACTTAA

Upstream 100 bases:

>100_bases
TCAATAAAGTACGATGATGATGTAGGGTCAAGCTTTATTGGAAAGTTATCCACTACTGATTTTATGAACCAACTTGGTAA
AATAACCCAATTAACCAAGG

Downstream 100 bases:

>100_bases
ACCTTTTATATATAGCTAAAGTGACTTAGGTTCTCTAATTGCACATAAGTCAACAATAATTTTCACACAAATCAAAACAG
CATATCTTCTCCATAATCCT

Product: cytochrome c-type biogenesis protein CcmH, putative

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CycL [H]

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MRAVVSLLFILIFHSGVNAFTLDNKLRDKSMEKRATSLFEIIRCSICSGESLSESGSQIAYDMREAIRKKINDGYTDEEI
ISELKNSYGNSIIIVPPIKSSTYILWFIPLTTLLIGCFLIQRYINTTT

Sequences:

>Translated_128_residues
MRAVVSLLFILIFHSGVNAFTLDNKLRDKSMEKRATSLFEIIRCSICSGESLSESGSQIAYDMREAIRKKINDGYTDEEI
ISELKNSYGNSIIIVPPIKSSTYILWFIPLTTLLIGCFLIQRYINTTT
>Mature_128_residues
MRAVVSLLFILIFHSGVNAFTLDNKLRDKSMEKRATSLFEIIRCSICSGESLSESGSQIAYDMREAIRKKINDGYTDEEI
ISELKNSYGNSIIIVPPIKSSTYILWFIPLTTLLIGCFLIQRYINTTT

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmH/CycL/Ccl2/NrfF family [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=121, Percent_Identity=30.5785123966942, Blast_Score=72, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 14506; Mature: 14506

Theoretical pI: Translated: 8.03; Mature: 8.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAVVSLLFILIFHSGVNAFTLDNKLRDKSMEKRATSLFEIIRCSICSGESLSESGSQIA
CHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
YDMREAIRKKINDGYTDEEIISELKNSYGNSIIIVPPIKSSTYILWFIPLTTLLIGCFLI
HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCEEEHHHHHHHHHHHHHHH
QRYINTTT
HHHHHCCC
>Mature Secondary Structure
MRAVVSLLFILIFHSGVNAFTLDNKLRDKSMEKRATSLFEIIRCSICSGESLSESGSQIA
CHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
YDMREAIRKKINDGYTDEEIISELKNSYGNSIIIVPPIKSSTYILWFIPLTTLLIGCFLI
HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCEEEHHHHHHHHHHHHHHH
QRYINTTT
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7715602; 11481430 [H]