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The map label for this gene is cycM [H]

Identifier: 225630520

GI number: 225630520

Start: 834548

End: 835075

Strand: Reverse

Name: cycM [H]

Synonym: WRi_007720

Alternate gene names: 225630520

Gene position: 835075-834548 (Counterclockwise)

Preceding gene: 225630521

Following gene: 225630519

Centisome position: 57.76

GC content: 38.45

Gene sequence:

>528_bases
ATGGAGCTTAATAAGATTGCAGCATCGATTTTACTTTCTGGGCTAATCATTATGATAGTTAGTAATGTAGTTGATATGCT
TTACAGTCCAGAAGAATATAAGATTGAACACCAAACGATAGTAGCTGCTGGCAGCAATGAGTTCCAGCAAAAAATCGAGC
AAGTGGCGCTTGATATTGGAGCGCTCATGCAGAATGCTAGCTTTGAGAAAGGTAAATCAGCAGCAAAAAAATGTATAGCC
TGCCATAGTTTTGAGAAAGGTGGAATGAATAAAGTAGGACCAAACTTATGGAACATAGTTGGAAATAAAAAGGCCCATCT
TGGTAACTCATTCAATTACTCAAAAGCAGTGCTTGAAAGAGGTGGAAAATGGGGGTATGAGGAGCTATTTGCCTTTTTAA
AGAACCCAAAAGCCTATATAAAAGGTACACGTATGGCATTTGCAGGTATTTCCAATCCACAAGAAATTGCAGATCTAGTT
AGTTATTTGCATCAATTGAGTGATAGCCCGGTTGCTTTGCCAAAGTAG

Upstream 100 bases:

>100_bases
GCTATAGAGACTCTCATCTTTAGCGAGCTTCAAGGTAATTGGTTGCTATTTGCGAAAATATTCGCATAATTTAAGTAACA
TTACTTAATAAAAATTAACT

Downstream 100 bases:

>100_bases
TATGGATTATTGTAAATTGTTTGATGGAAATAATGGTCACATAGCATATCGAAAGCTACAAGGAAAGAAAGCTTCTGTAG
TTTTTTTCGGTGGATTTGCA

Product: cytochrome c family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MELNKIAASILLSGLIIMIVSNVVDMLYSPEEYKIEHQTIVAAGSNEFQQKIEQVALDIGALMQNASFEKGKSAAKKCIA
CHSFEKGGMNKVGPNLWNIVGNKKAHLGNSFNYSKAVLERGGKWGYEELFAFLKNPKAYIKGTRMAFAGISNPQEIADLV
SYLHQLSDSPVALPK

Sequences:

>Translated_175_residues
MELNKIAASILLSGLIIMIVSNVVDMLYSPEEYKIEHQTIVAAGSNEFQQKIEQVALDIGALMQNASFEKGKSAAKKCIA
CHSFEKGGMNKVGPNLWNIVGNKKAHLGNSFNYSKAVLERGGKWGYEELFAFLKNPKAYIKGTRMAFAGISNPQEIADLV
SYLHQLSDSPVALPK
>Mature_175_residues
MELNKIAASILLSGLIIMIVSNVVDMLYSPEEYKIEHQTIVAAGSNEFQQKIEQVALDIGALMQNASFEKGKSAAKKCIA
CHSFEKGGMNKVGPNLWNIVGNKKAHLGNSFNYSKAVLERGGKWGYEELFAFLKNPKAYIKGTRMAFAGISNPQEIADLV
SYLHQLSDSPVALPK

Specific function: May be involved in electron transfer from bc1 complex to aa3 [H]

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Cell membrane; Single-pass type II membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family [H]

Homologues:

Organism=Homo sapiens, GI11128019, Length=104, Percent_Identity=41.3461538461538, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17539604, Length=99, Percent_Identity=39.3939393939394, Blast_Score=76, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17566554, Length=106, Percent_Identity=34.9056603773585, Blast_Score=67, Evalue=7e-12,
Organism=Saccharomyces cerevisiae, GI6320796, Length=87, Percent_Identity=40.2298850574713, Blast_Score=80, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6322508, Length=89, Percent_Identity=40.4494382022472, Blast_Score=75, Evalue=4e-15,
Organism=Drosophila melanogaster, GI17137228, Length=96, Percent_Identity=44.7916666666667, Blast_Score=87, Evalue=4e-18,
Organism=Drosophila melanogaster, GI17137204, Length=102, Percent_Identity=41.1764705882353, Blast_Score=83, Evalue=9e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 19177; Mature: 19177

Theoretical pI: Translated: 9.02; Mature: 9.02

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELNKIAASILLSGLIIMIVSNVVDMLYSPEEYKIEHQTIVAAGSNEFQQKIEQVALDIG
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEHHHEEEECCCHHHHHHHHHHHHHHH
ALMQNASFEKGKSAAKKCIACHSFEKGGMNKVGPNLWNIVGNKKAHLGNSFNYSKAVLER
HHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHHCCCCCCHHHHHHHC
GGKWGYEELFAFLKNPKAYIKGTRMAFAGISNPQEIADLVSYLHQLSDSPVALPK
CCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MELNKIAASILLSGLIIMIVSNVVDMLYSPEEYKIEHQTIVAAGSNEFQQKIEQVALDIG
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEHHHEEEECCCHHHHHHHHHHHHHHH
ALMQNASFEKGKSAAKKCIACHSFEKGGMNKVGPNLWNIVGNKKAHLGNSFNYSKAVLER
HHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHHCCCCCCHHHHHHHC
GGKWGYEELFAFLKNPKAYIKGTRMAFAGISNPQEIADLVSYLHQLSDSPVALPK
CCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]