Click here to switch to the map view.

The map label for this gene is rpsF [H]

Identifier: 225630394

GI number: 225630394

Start: 673639

End: 674412

Strand: Direct

Name: rpsF [H]

Synonym: WRi_006230

Alternate gene names: 225630394

Gene position: 673639-674412 (Clockwise)

Preceding gene: 225630393

Following gene: 225630395

Centisome position: 46.59

GC content: 32.3

Gene sequence:

>774_bases
GTGAATCTTTATGAATTTACTTTTATAGCACAACAAGGATTATTACAGCAAGAAGTAGAGGAGATGGTCCAAGAGCTAGC
TGTCTTGTTGAAAAACATTAAAACAGATGTTATGTTCCAGCAAATCAGGGATATTCTGAAAAAAGGAAATGACAAGCTTA
CAAAACAAGAGTTAGAAGTGCGTGCTGAGAACATTAAAGAAAGTCTAGTTGCTTACTCTGATTTCTTGGAAGATCTTACA
AAAATTTTATGGGTTGAATTAGAAGAAGATCTTTCAAATTTGAAAGAAGTGAAGTCAAAAATCGATAAAGAGTTGAAAGA
TGACCTAAAAGATTTAGGAATAACGCAAGATTTTACAAAATTTCTAGGAGGCAGTACTAAAAGTGCGTTTATCCATAACG
CAGTAAATGCTTTGAAGAGAAATATTTCAGAACATCTAATAAAGATTTTTCAAGATATTTTGAAAGATTTTAGAATAAAC
GGTCCAACTCAATCGAGCAAAGCATTGGAAATGCTTTTGAAAAACATTGAAGCATCAGGATTAATCAAGTATGAACATTG
GGGTCTTTTGGATTTTGCATATCACACAAATAAAATGAAGAGCGGTCATTATTGTATAATGTGCATAAGTTCTACTGCAA
GCATTCTGGATGAATTTGTGCGTAGAATGAAACTTAATGAGAACGTTATTCGCCACTTTCCTGTGCAGGTTGATAAAATT
TTTGAAGGTAAATCTTATATGATGAATAAACAAATTGAGGAACAAAGCGCATAA

Upstream 100 bases:

>100_bases
CTTAAGCTGGATTAAAGGCGTAGAAATTAATACAAATAACTTGCTTATATAAAAAAGCTTTATATAATGAAATATTTAAT
CGGTATTAAAGGAAGATATA

Downstream 100 bases:

>100_bases
TGATGAAAAGACGAAATAGTTTTAATAATTCTTACGTATCTGTAAATAATAGGACTGGCTTTAGGCGTTCTAAAGTTTGC
CCTCTTGCTGCGTCTAAAGA

Product: 30S ribosomal protein S6

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MNLYEFTFIAQQGLLQQEVEEMVQELAVLLKNIKTDVMFQQIRDILKKGNDKLTKQELEVRAENIKESLVAYSDFLEDLT
KILWVELEEDLSNLKEVKSKIDKELKDDLKDLGITQDFTKFLGGSTKSAFIHNAVNALKRNISEHLIKIFQDILKDFRIN
GPTQSSKALEMLLKNIEASGLIKYEHWGLLDFAYHTNKMKSGHYCIMCISSTASILDEFVRRMKLNENVIRHFPVQVDKI
FEGKSYMMNKQIEEQSA

Sequences:

>Translated_257_residues
MNLYEFTFIAQQGLLQQEVEEMVQELAVLLKNIKTDVMFQQIRDILKKGNDKLTKQELEVRAENIKESLVAYSDFLEDLT
KILWVELEEDLSNLKEVKSKIDKELKDDLKDLGITQDFTKFLGGSTKSAFIHNAVNALKRNISEHLIKIFQDILKDFRIN
GPTQSSKALEMLLKNIEASGLIKYEHWGLLDFAYHTNKMKSGHYCIMCISSTASILDEFVRRMKLNENVIRHFPVQVDKI
FEGKSYMMNKQIEEQSA
>Mature_257_residues
MNLYEFTFIAQQGLLQQEVEEMVQELAVLLKNIKTDVMFQQIRDILKKGNDKLTKQELEVRAENIKESLVAYSDFLEDLT
KILWVELEEDLSNLKEVKSKIDKELKDDLKDLGITQDFTKFLGGSTKSAFIHNAVNALKRNISEHLIKIFQDILKDFRIN
GPTQSSKALEMLLKNIEASGLIKYEHWGLLDFAYHTNKMKSGHYCIMCISSTASILDEFVRRMKLNENVIRHFPVQVDKI
FEGKSYMMNKQIEEQSA

Specific function: Binds together with S18 to 16S ribosomal RNA [H]

COG id: COG0360

COG function: function code J; Ribosomal protein S6

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S6P family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000529
- InterPro:   IPR020814
- InterPro:   IPR014717 [H]

Pfam domain/function: PF01250 Ribosomal_S6 [H]

EC number: NA

Molecular weight: Translated: 29815; Mature: 29815

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLYEFTFIAQQGLLQQEVEEMVQELAVLLKNIKTDVMFQQIRDILKKGNDKLTKQELEV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
RAENIKESLVAYSDFLEDLTKILWVELEEDLSNLKEVKSKIDKELKDDLKDLGITQDFTK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
FLGGSTKSAFIHNAVNALKRNISEHLIKIFQDILKDFRINGPTQSSKALEMLLKNIEASG
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC
LIKYEHWGLLDFAYHTNKMKSGHYCIMCISSTASILDEFVRRMKLNENVIRHFPVQVDKI
EEEECCCCHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
FEGKSYMMNKQIEEQSA
HCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MNLYEFTFIAQQGLLQQEVEEMVQELAVLLKNIKTDVMFQQIRDILKKGNDKLTKQELEV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
RAENIKESLVAYSDFLEDLTKILWVELEEDLSNLKEVKSKIDKELKDDLKDLGITQDFTK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
FLGGSTKSAFIHNAVNALKRNISEHLIKIFQDILKDFRINGPTQSSKALEMLLKNIEASG
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC
LIKYEHWGLLDFAYHTNKMKSGHYCIMCISSTASILDEFVRRMKLNENVIRHFPVQVDKI
EEEECCCCHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
FEGKSYMMNKQIEEQSA
HCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA