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The map label for this gene is sohB [C]

Identifier: 225630333

GI number: 225630333

Start: 591287

End: 592348

Strand: Reverse

Name: sohB [C]

Synonym: WRi_005560

Alternate gene names: 225630333

Gene position: 592348-591287 (Counterclockwise)

Preceding gene: 225630334

Following gene: 225630332

Centisome position: 40.97

GC content: 35.69

Gene sequence:

>1062_bases
ATGAAAAACCAAGCGATATGGCTAAACAGATGTGTAATGGTAGAACCAAGGAGTTTTGAATTACTGTCACTACAAACAGG
AAAGCAGCCTATCTTTAAAAATATAAAACATGCGGTAAGAAATAGTGAAAGAGGAATAATACCAATACATGGAATCTTGA
CGAAAAAGTCAGAAGTTTTTGATGATGTATTGGGGATGACATCGTATGAGAAGATAAGTGAAGAGATAGAAGAAGCTTTA
ATAGATAAAGAAGTAGAAACAATAATTTTGGACATAGACAGCCCCGGAGGAGAAGTAAACGGTTTATTCGACCTTTCCGA
CTTTATTTACCAAGCAAGGAGAAAAAAGAGGATTGTGGCAATAGCAAATGATGATGCGTATTCTGCGGCGTATGCAATTG
CATCAAGTGCTGAAAAAGTATTGGTAACTAGAACTTCAGGAGTTGGAAGCATAGGAGTAATAGCAAGTCATATAGATCAA
AGTGGGTTTGATGAAAAACAGGGAATAAAATATACGACAGTATTTGCAGGAAGTAGAAAAAATGATTTAAATCCACATGA
GCCAATAACTTCTGAGAGTTTAGAAAGCCTAAAAAGCGAAGTGAATCGTTTATATGGAATGCTGGTTGAGCTAATAGCAC
GCAATAGAAACCTTTCTGTAGAGGCAATAAAATCAACAGAAGCAGGGCTATATTTTGGCGAGAAAGCAGTAGAAATAGGT
CTTGCAGATGGAATTACAATTCTTTCAGAGTTTAAATCTATTAATAAAAAAGGGGATATTACTATGAATGAAAAAACTAC
AAATGACCTAGAAACTGACAATTTAACTAAGTATCGTACTGAAGTTCTTGAATTAATACGTTTATGTAACTTATCACGAA
TGCCAGAAAAGATAGGAGAATTTATTGAGCAAAGCGTAAGTGTTGAGCAAGCCAGGGAAGTTTTAATGGAGTTACTTGCA
GAGCGAACGAAGAAGACAGAAATACTAAGTGCAATACCACAGAATTCAGGAGAAGAGTTGATGATGCAGGTAGCGAAAAG
TCGTGCGCAATCAAACATTTAA

Upstream 100 bases:

>100_bases
ATGTAGAAGAAATAGACCAAGAAATTGCAGAAGATCAAAGACGTGCTAGTTCCTTGGGTTTAAGTTTTGATTCCGACGTT
ACTACTAATCAAGAGATAAT

Downstream 100 bases:

>100_bases
AGTATGTGTATAACCGCCGTGTATAACAACCACAAATATGGCGGTAAAAAAATAAAAAAAGGAGAGAAAAAGACATGATA
AGTATAACTGAAGGAAATAA

Product: minor capsid protein C, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 353; Mature: 353

Protein sequence:

>353_residues
MKNQAIWLNRCVMVEPRSFELLSLQTGKQPIFKNIKHAVRNSERGIIPIHGILTKKSEVFDDVLGMTSYEKISEEIEEAL
IDKEVETIILDIDSPGGEVNGLFDLSDFIYQARRKKRIVAIANDDAYSAAYAIASSAEKVLVTRTSGVGSIGVIASHIDQ
SGFDEKQGIKYTTVFAGSRKNDLNPHEPITSESLESLKSEVNRLYGMLVELIARNRNLSVEAIKSTEAGLYFGEKAVEIG
LADGITILSEFKSINKKGDITMNEKTTNDLETDNLTKYRTEVLELIRLCNLSRMPEKIGEFIEQSVSVEQAREVLMELLA
ERTKKTEILSAIPQNSGEELMMQVAKSRAQSNI

Sequences:

>Translated_353_residues
MKNQAIWLNRCVMVEPRSFELLSLQTGKQPIFKNIKHAVRNSERGIIPIHGILTKKSEVFDDVLGMTSYEKISEEIEEAL
IDKEVETIILDIDSPGGEVNGLFDLSDFIYQARRKKRIVAIANDDAYSAAYAIASSAEKVLVTRTSGVGSIGVIASHIDQ
SGFDEKQGIKYTTVFAGSRKNDLNPHEPITSESLESLKSEVNRLYGMLVELIARNRNLSVEAIKSTEAGLYFGEKAVEIG
LADGITILSEFKSINKKGDITMNEKTTNDLETDNLTKYRTEVLELIRLCNLSRMPEKIGEFIEQSVSVEQAREVLMELLA
ERTKKTEILSAIPQNSGEELMMQVAKSRAQSNI
>Mature_353_residues
MKNQAIWLNRCVMVEPRSFELLSLQTGKQPIFKNIKHAVRNSERGIIPIHGILTKKSEVFDDVLGMTSYEKISEEIEEAL
IDKEVETIILDIDSPGGEVNGLFDLSDFIYQARRKKRIVAIANDDAYSAAYAIASSAEKVLVTRTSGVGSIGVIASHIDQ
SGFDEKQGIKYTTVFAGSRKNDLNPHEPITSESLESLKSEVNRLYGMLVELIARNRNLSVEAIKSTEAGLYFGEKAVEIG
LADGITILSEFKSINKKGDITMNEKTTNDLETDNLTKYRTEVLELIRLCNLSRMPEKIGEFIEQSVSVEQAREVLMELLA
ERTKKTEILSAIPQNSGEELMMQVAKSRAQSNI

Specific function: Multicopy Suppressor Of The Htra (Degp) Null Phenotype. It Is Possibly A Protease, Not Essential For Bacterial VIability. [C]

COG id: COG0616

COG function: function code OU; Periplasmic serine proteases (ClpP class)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S49 family [H]

Homologues:

Organism=Escherichia coli, GI1787527, Length=183, Percent_Identity=30.6010928961749, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004635
- InterPro:   IPR002142 [H]

Pfam domain/function: PF01343 Peptidase_S49 [H]

EC number: 3.4.21.-

Molecular weight: Translated: 39336; Mature: 39336

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNQAIWLNRCVMVEPRSFELLSLQTGKQPIFKNIKHAVRNSERGIIPIHGILTKKSEVF
CCCCEEEEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHH
DDVLGMTSYEKISEEIEEALIDKEVETIILDIDSPGGEVNGLFDLSDFIYQARRKKRIVA
HHHHCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEHHHHHHHHHHHCCEEEE
IANDDAYSAAYAIASSAEKVLVTRTSGVGSIGVIASHIDQSGFDEKQGIKYTTVFAGSRK
EECCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCCCHHHCCEEEEEEECCCC
NDLNPHEPITSESLESLKSEVNRLYGMLVELIARNRNLSVEAIKSTEAGLYFGEKAVEIG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEECCHHHEEE
LADGITILSEFKSINKKGDITMNEKTTNDLETDNLTKYRTEVLELIRLCNLSRMPEKIGE
CCCCHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHH
FIEQSVSVEQAREVLMELLAERTKKTEILSAIPQNSGEELMMQVAKSRAQSNI
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKNQAIWLNRCVMVEPRSFELLSLQTGKQPIFKNIKHAVRNSERGIIPIHGILTKKSEVF
CCCCEEEEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHH
DDVLGMTSYEKISEEIEEALIDKEVETIILDIDSPGGEVNGLFDLSDFIYQARRKKRIVA
HHHHCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEHHHHHHHHHHHCCEEEE
IANDDAYSAAYAIASSAEKVLVTRTSGVGSIGVIASHIDQSGFDEKQGIKYTTVFAGSRK
EECCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCCCHHHCCEEEEEEECCCC
NDLNPHEPITSESLESLKSEVNRLYGMLVELIARNRNLSVEAIKSTEAGLYFGEKAVEIG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEECCHHHEEE
LADGITILSEFKSINKKGDITMNEKTTNDLETDNLTKYRTEVLELIRLCNLSRMPEKIGE
CCCCHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHH
FIEQSVSVEQAREVLMELLAERTKKTEILSAIPQNSGEELMMQVAKSRAQSNI
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases) [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]