BacMap

Definition	Wolbachia sp. wRi, complete genome.
Accession	NC_012416
Length	1,445,873

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The map label for this gene is yahD [C]

Identifier: 225630322

GI number: 225630322

Start: 584493

End: 585227

Strand: Reverse

Name: yahD [C]

Synonym: WRi_005450

Alternate gene names: 225630322

Gene position: 585227-584493 (Counterclockwise)

Preceding gene: 225630323

Following gene: 225630321

Centisome position: 40.48

GC content: 35.51

Gene sequence:

>735_bases
ATGGGGTTCAGCGAAGAAAAGAAAGAATCTTTTAACAAGTTTTTTAAAGAAGTATCAAGGAATGGATTTAAAAATATTAA
TAAAAGGGATGAAAAAGGAGAAACAGTATTGCACCATGCAGTAGAAAATTCCGATCACAAAACAGTGAGGTTATTAATAG
AAAAAGGAGCGGAGATCAATGCAAGAGATAAAAATGGTTATACGCCACTGCACTGTGCAGTATTCGCAAAAAGTTTAGAA
AATGTAAAAGTACTGCTAAGGTCAGGAGCGGAAATAAATGCCACTCAATATGTCAGTGGATGTACGCCACTGCACTCTGC
ATGTAAAATAGGAGGAGCAGGAGTTGAAATAATAAAAGAGCTAGTAAAAGCAGGATCTGAAGTTAATCAACTGAATAAGT
ATGGTTCAACACCAATGTATTACATATGGGAAAGTGAAAAGTATTGTCTATGTGATAGGGAAGAGAGTGAAAAGGCAAGT
AAATTTTTGAGAGCAAAAGGTGGAGTAACAAAAAGTAGAAAACTGACGTGCTATGGAATAGAGGGGCTAGTGGGAGAAAT
AGCAGACAAGTTGGATAGGAGCTATATGCCAGAGCTAAAAATAATGGAGATCGAAGAAATAAGGAAGAGAGACAAATCAT
TAATAAAGAAAGAATGTCAAAATTTAGCAACCAAGATAATGTGCCAAGTAAACGAAATGATAGATGAGGTGGTGAGAATT
AAAAAAGGGACTTAA

Upstream 100 bases:

>100_bases
GACTTGCCTTTTTATGCCAAAACGCACATAACTTGAATAGCAGCAGGTAAATATAAGAAATTTGTCTGGCGCTAGAAAAG
ATAATTTTGTGAGGTATGAA

Downstream 100 bases:

>100_bases
ATTTAAAGAAAAGGTGAGGTAGGTTATGAGTAAAAAAGAAAAAGAGGATGCACTAAAAGAATTATTAGAGAACTCAGGTA
AAAATATTAAGGGGACAAAA

Product: ankyrin repeat domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MGFSEEKKESFNKFFKEVSRNGFKNINKRDEKGETVLHHAVENSDHKTVRLLIEKGAEINARDKNGYTPLHCAVFAKSLE
NVKVLLRSGAEINATQYVSGCTPLHSACKIGGAGVEIIKELVKAGSEVNQLNKYGSTPMYYIWESEKYCLCDREESEKAS
KFLRAKGGVTKSRKLTCYGIEGLVGEIADKLDRSYMPELKIMEIEEIRKRDKSLIKKECQNLATKIMCQVNEMIDEVVRI
KKGT

Sequences:

>Translated_244_residues
MGFSEEKKESFNKFFKEVSRNGFKNINKRDEKGETVLHHAVENSDHKTVRLLIEKGAEINARDKNGYTPLHCAVFAKSLE
NVKVLLRSGAEINATQYVSGCTPLHSACKIGGAGVEIIKELVKAGSEVNQLNKYGSTPMYYIWESEKYCLCDREESEKAS
KFLRAKGGVTKSRKLTCYGIEGLVGEIADKLDRSYMPELKIMEIEEIRKRDKSLIKKECQNLATKIMCQVNEMIDEVVRI
KKGT
>Mature_243_residues
GFSEEKKESFNKFFKEVSRNGFKNINKRDEKGETVLHHAVENSDHKTVRLLIEKGAEINARDKNGYTPLHCAVFAKSLEN
VKVLLRSGAEINATQYVSGCTPLHSACKIGGAGVEIIKELVKAGSEVNQLNKYGSTPMYYIWESEKYCLCDREESEKASK
FLRAKGGVTKSRKLTCYGIEGLVGEIADKLDRSYMPELKIMEIEEIRKRDKSLIKKECQNLATKIMCQVNEMIDEVVRIK
KGT

Specific function: Unknown

COG id: COG0666

COG function: function code R; FOG: Ankyrin repeat

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 18 ANK repeats [H]

Homologues:

Organism=Homo sapiens, GI304361760, Length=127, Percent_Identity=38.5826771653543, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI304361757, Length=127, Percent_Identity=38.5826771653543, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI68131557, Length=127, Percent_Identity=38.5826771653543, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI24233530, Length=127, Percent_Identity=41.7322834645669, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI134948558, Length=114, Percent_Identity=40.3508771929825, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI134948605, Length=114, Percent_Identity=40.3508771929825, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI157743284, Length=162, Percent_Identity=34.5679012345679, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI157266328, Length=134, Percent_Identity=38.0597014925373, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI89363047, Length=116, Percent_Identity=39.6551724137931, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI164664508, Length=136, Percent_Identity=35.2941176470588, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI13129098, Length=114, Percent_Identity=41.2280701754386, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI56676397, Length=114, Percent_Identity=38.5964912280702, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI256574792, Length=157, Percent_Identity=31.8471337579618, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI30425444, Length=121, Percent_Identity=36.3636363636364, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI70780355, Length=106, Percent_Identity=37.7358490566038, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI70780359, Length=106, Percent_Identity=37.7358490566038, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI70780353, Length=106, Percent_Identity=37.7358490566038, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI41055989, Length=128, Percent_Identity=32.8125, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI41350198, Length=91, Percent_Identity=39.5604395604396, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI70780357, Length=106, Percent_Identity=37.7358490566038, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI215598574, Length=106, Percent_Identity=37.7358490566038, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI188219549, Length=121, Percent_Identity=37.1900826446281, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI16975496, Length=116, Percent_Identity=38.7931034482759, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI187608777, Length=115, Percent_Identity=35.6521739130435, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI41327754, Length=117, Percent_Identity=36.7521367521368, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI87239981, Length=125, Percent_Identity=35.2, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI18252778, Length=116, Percent_Identity=31.8965517241379, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI55770876, Length=109, Percent_Identity=36.697247706422, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI188595682, Length=140, Percent_Identity=32.8571428571429, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI52426737, Length=140, Percent_Identity=32.8571428571429, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI22208957, Length=115, Percent_Identity=36.5217391304348, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI4506217, Length=113, Percent_Identity=34.5132743362832, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI28605137, Length=113, Percent_Identity=34.5132743362832, Blast_Score=65, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI115533713, Length=154, Percent_Identity=33.7662337662338, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71981414, Length=114, Percent_Identity=31.5789473684211, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI71981389, Length=114, Percent_Identity=31.5789473684211, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI25145251, Length=114, Percent_Identity=31.5789473684211, Blast_Score=64, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17542700, Length=114, Percent_Identity=31.5789473684211, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24654624, Length=119, Percent_Identity=37.8151260504202, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI161082089, Length=144, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI45553307, Length=111, Percent_Identity=36.9369369369369, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24644921, Length=111, Percent_Identity=36.9369369369369, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24644919, Length=111, Percent_Identity=36.9369369369369, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24581260, Length=123, Percent_Identity=34.9593495934959, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24581258, Length=123, Percent_Identity=34.9593495934959, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI17998549, Length=112, Percent_Identity=37.5, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI221472807, Length=112, Percent_Identity=37.5, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI45552223, Length=112, Percent_Identity=37.5, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI161082099, Length=144, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI161082085, Length=144, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI161082110, Length=160, Percent_Identity=31.25, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI161082106, Length=160, Percent_Identity=31.25, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI161082096, Length=160, Percent_Identity=31.25, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI161082081, Length=160, Percent_Identity=31.25, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI281359521, Length=109, Percent_Identity=37.6146788990826, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI281359519, Length=109, Percent_Identity=37.6146788990826, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI28558752, Length=109, Percent_Identity=37.6146788990826, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI28558750, Length=109, Percent_Identity=37.6146788990826, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI28558756, Length=109, Percent_Identity=37.6146788990826, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI28558754, Length=109, Percent_Identity=37.6146788990826, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI161077993, Length=105, Percent_Identity=40.9523809523809, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI161077991, Length=121, Percent_Identity=38.0165289256198, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24643883, Length=121, Percent_Identity=38.0165289256198, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002110
- InterPro:   IPR020683
- InterPro:   IPR007685 [H]

Pfam domain/function: PF00023 Ank; PF04607 RelA_SpoT [H]

EC number: NA

Molecular weight: Translated: 27579; Mature: 27448

Theoretical pI: Translated: 8.86; Mature: 8.86

Prosite motif: PS50088 ANK_REPEAT ; PS50297 ANK_REP_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFSEEKKESFNKFFKEVSRNGFKNINKRDEKGETVLHHAVENSDHKTVRLLIEKGAEIN
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC
ARDKNGYTPLHCAVFAKSLENVKVLLRSGAEINATQYVSGCTPLHSACKIGGAGVEIIKE
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHCCCCHHHHHHH
LVKAGSEVNQLNKYGSTPMYYIWESEKYCLCDREESEKASKFLRAKGGVTKSRKLTCYGI
HHHCCHHHHHHHHCCCCCEEEEECCCCEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEEH
EGLVGEIADKLDRSYMPELKIMEIEEIRKRDKSLIKKECQNLATKIMCQVNEMIDEVVRI
HHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKGT
HCCC
>Mature Secondary Structure 
GFSEEKKESFNKFFKEVSRNGFKNINKRDEKGETVLHHAVENSDHKTVRLLIEKGAEIN
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC
ARDKNGYTPLHCAVFAKSLENVKVLLRSGAEINATQYVSGCTPLHSACKIGGAGVEIIKE
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHCCCCHHHHHHH
LVKAGSEVNQLNKYGSTPMYYIWESEKYCLCDREESEKASKFLRAKGGVTKSRKLTCYGI
HHHCCHHHHHHHHCCCCCEEEEECCCCEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEEH
EGLVGEIADKLDRSYMPELKIMEIEEIRKRDKSLIKKECQNLATKIMCQVNEMIDEVVRI
HHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKGT
HCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA