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The map label for this gene is radC [C]

Identifier: 225630223

GI number: 225630223

Start: 462135

End: 462809

Strand: Reverse

Name: radC [C]

Synonym: WRi_004290

Alternate gene names: 225630223

Gene position: 462809-462135 (Counterclockwise)

Preceding gene: 225630224

Following gene: 225630222

Centisome position: 32.01

GC content: 34.52

Gene sequence:

>675_bases
ATGAAAAATTACAAAAAGGGGCATAGAAAGCGCCTAAGGGAGAAAATTATTTTAGATAATGGACAATCATTACTTGATTA
TGAGGTTTTAGAGCACATTTTATATTCAGCATACAGTAGAATTGATGTAAAGCCGATAGCAAAGAGTTTGATAGAAAATT
TTGGCAGTTTGAATAAAGTTTTTAATGCTGACCTGGAAGCGCTGCAAAACGTTGATGGTGTCAGCAATGCAGCGATATCT
GCCATCTTTTGTGTAAAACAAGCCTTTGTTCGTTCTGCAAGAGAAGAAATAAAAGACCTGCCTATAATCGATAACTGGGA
AAAATTGCTTGATTATTTAAGAATAAGTATAGGAAGCCTCAATAAGGAAAATTTTCGCGTCATCTATATGAATAAAAAGT
ATCGTCTAATAGCGGAAGACCTGCAAAATATTGGTACAGTAGATCAAACTCCTCTTTATGTCAGAGAGATCATCAAGCGC
GCACTTTTGATTGGTTCAACATCCATTGTAATATCTCACAATCATCCAAGCAGAGATACACAACCTTCAAATAGCGATAT
ATCTCTCACTAGACAACTAGCAGAAGCTTGCCAAAGTATAGGAATAGAATTAATAGATCACATTATTATTACATTCAGTA
GCTATTTTAGTTTCAAGGAAAATAGGTTGTTGTGA

Upstream 100 bases:

>100_bases
AAAAATGAATGTTCTTACAATTGTGCGTCATGCGCTTTATTAAATATTTTACTTAAAAATCTAATTTCTTATTATACAAG
AGATAAGCAATTCATTGATG

Downstream 100 bases:

>100_bases
AAGCCTTTATAGCTACAGTAACTTAGATTTACCGACAATCGTCATTCCGCTACGTGTTAGCGGCTAAGAGATACCGTGAA
TGAATTGCGGTATGACGTAG

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MKNYKKGHRKRLREKIILDNGQSLLDYEVLEHILYSAYSRIDVKPIAKSLIENFGSLNKVFNADLEALQNVDGVSNAAIS
AIFCVKQAFVRSAREEIKDLPIIDNWEKLLDYLRISIGSLNKENFRVIYMNKKYRLIAEDLQNIGTVDQTPLYVREIIKR
ALLIGSTSIVISHNHPSRDTQPSNSDISLTRQLAEACQSIGIELIDHIIITFSSYFSFKENRLL

Sequences:

>Translated_224_residues
MKNYKKGHRKRLREKIILDNGQSLLDYEVLEHILYSAYSRIDVKPIAKSLIENFGSLNKVFNADLEALQNVDGVSNAAIS
AIFCVKQAFVRSAREEIKDLPIIDNWEKLLDYLRISIGSLNKENFRVIYMNKKYRLIAEDLQNIGTVDQTPLYVREIIKR
ALLIGSTSIVISHNHPSRDTQPSNSDISLTRQLAEACQSIGIELIDHIIITFSSYFSFKENRLL
>Mature_224_residues
MKNYKKGHRKRLREKIILDNGQSLLDYEVLEHILYSAYSRIDVKPIAKSLIENFGSLNKVFNADLEALQNVDGVSNAAIS
AIFCVKQAFVRSAREEIKDLPIIDNWEKLLDYLRISIGSLNKENFRVIYMNKKYRLIAEDLQNIGTVDQTPLYVREIIKR
ALLIGSTSIVISHNHPSRDTQPSNSDISLTRQLAEACQSIGIELIDHIIITFSSYFSFKENRLL

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=208, Percent_Identity=27.8846153846154, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI2367100, Length=114, Percent_Identity=36.8421052631579, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788997, Length=114, Percent_Identity=35.9649122807018, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1788312, Length=114, Percent_Identity=37.719298245614, Blast_Score=94, Evalue=9e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 25672; Mature: 25672

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNYKKGHRKRLREKIILDNGQSLLDYEVLEHILYSAYSRIDVKPIAKSLIENFGSLNKV
CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
FNADLEALQNVDGVSNAAISAIFCVKQAFVRSAREEIKDLPIIDNWEKLLDYLRISIGSL
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
NKENFRVIYMNKKYRLIAEDLQNIGTVDQTPLYVREIIKRALLIGSTSIVISHNHPSRDT
CCCCEEEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCC
QPSNSDISLTRQLAEACQSIGIELIDHIIITFSSYFSFKENRLL
CCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKNYKKGHRKRLREKIILDNGQSLLDYEVLEHILYSAYSRIDVKPIAKSLIENFGSLNKV
CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
FNADLEALQNVDGVSNAAISAIFCVKQAFVRSAREEIKDLPIIDNWEKLLDYLRISIGSL
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
NKENFRVIYMNKKYRLIAEDLQNIGTVDQTPLYVREIIKRALLIGSTSIVISHNHPSRDT
CCCCEEEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCC
QPSNSDISLTRQLAEACQSIGIELIDHIIITFSSYFSFKENRLL
CCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA