Click here to switch to the map view.

The map label for this gene is yjcF [C]

Identifier: 225630123

GI number: 225630123

Start: 323974

End: 325779

Strand: Direct

Name: yjcF [C]

Synonym: WRi_003050

Alternate gene names: 225630123

Gene position: 323974-325779 (Clockwise)

Preceding gene: 225630122

Following gene: 225630124

Centisome position: 22.41

GC content: 30.68

Gene sequence:

>1806_bases
ATGATTAGATTTTTGATATTAATTTTAGTTGGTCATTTATGTTATGGAAACGAAACAAATGATGAAAAAAATCAGATTAG
TGATTTTTTAAACGCTCTGCATGATGTAAAATACGTATCTTACAGTAAAAAAGACTTTGCTGAATTTTTGGTGCAGTGCC
ACAAAGAGGGCGTGCCAGAAGATTTTAAGAAAGGTTTTGGTTCTAACTTAAATGGAGCTAATTTTAACCAACTGTACCTA
AGTAAATCTGTTTTTGATGGAGTAAGTCTGATTGGTGCCGATTTTTCTAACACCGATTTATCCGATGTGTCTTTCATTGA
TGTTGATTTACGTGGTGCTAATTTTTCCAATGCTAATTTACATGGCATTAAAATAAAAGGTACAAATTTGAGTTTTACAA
AATTTGTTTCTGCAAACTTAACAGATATCGTATTTGATCAGTCTAATGTTAGTTATGCTGATTTTATCAGTTCCGATCTC
AAAAAAGTAAGTATGCACAACGTAATTGGTTTGCATACTAATTTCTCGAATGTGAAAATGAATTTCTCCAACTTATCAAA
CTCGAATGTTAGCCACGTAAATTTTAGTGATAGTGAAATAAACGATACTGTTATGCAGAAAAACAACCTTAATAATGCAA
GTTTCTTTGGAGTGGATGCATATAAATTAAAGATACAATTTTCTTCATTAAAAAATGCTAACATATATGGTGCAGAGTTA
AAAGAATCAGACTTTACAGGTAGCAATCTTTCCGATGCCTGCCTTAATTCTTCTATCATAATTGACAGTAACTTCGACGA
AACTAATTTAAGCAACACACAAATTTCCTATGTGAATGACGATAATTCAAGTTTTGTTCAATCTATACTAAATGGTTCCA
AGATAAAACATGCATATGTTTCTGAAGCAAATCTTCATGATGCTGATTTATCCAATATTGATTTTAGTTTTAGTGAACTG
CATCAAGTTAATGTCTCTAATGCTGACATTCGTCACGGAAAGTTTCATAATACTAAAGTTGCAAATTCTAACATGAATGG
CTCATTTTTTGACCATTCACTATTTACCTCTGCAAAGATAGAAGATTCAGACCTTTCTACAACTTCAATGTATAAGATAA
AAATCCAAGACTCTCAAGTTTATAACAGTACGCTTTCTCGCCATAATATTGATTCCAGTGAAATAGAAAATTCAACATTC
TTTAATTTATTAGCTGATAATTCGAGTTGGTCCAATTTAAAAGTAACTAATTCAAATTTTATTGAAAGCGATTTCAGATC
TTCTTTGCTTCACGCTAATGCCTTTAGGAAAACTAGTTTTTTTCTTAGCAATTTGAGTAATTCAACAATTAGTGATATGT
CTTTTCTCTCTTCAAGCATATATAAAAGTTCAGTTGTTGATGCTCACTTAACAGGTTGCAAATTTGATAATTCAATTTTG
ATTGACAATCAAGGGCAGGAGAAACTCACAGGTTCAGAAAATGCTATAACTTCGATTAAAGATTTGCAAGAGAAAATATC
ACAGGGTGAAAAATTTAATGTAAATTATTCTTACTTTGAATTTAAGGATATGAATTTAGAAAATGCCGATTTTTCTAATT
CAACATTGAGTAGAGCAAAGTTTGTAAACGTTAATTTGAATAAGGCAAATTTTGAAAAGACCGATTTGCGCTATACTGTC
TTTGATAACTCTTCTCTCATTGGCACCAACTTATCAAATTCTAATTTAGAAGGTTCTAGCTTTTTAAACTCTGATCCAAA
AAGCACCATGTTAAAAAATGCAAAGAAAAATGACCGTAAAAAGTGA

Upstream 100 bases:

>100_bases
CTTTTGGAGGATAGAAAAATAGACAATAAAGAAAGCTCAGCAATGTACGATTGGGCTGTGAAAACGAAAGAAAACAATGA
GTTGCAGTGTGATAAGCAAG

Downstream 100 bases:

>100_bases
GGGCGTATTATTGGTTCTATCCTCCCCTTCTGGAGCTGGAAAAACTACTATATCAGCAAAATTACTTGAGCGATCAACTA
ATTTAGTTAGGTCTGTTTCT

Product: pentapeptide repeat domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 601; Mature: 601

Protein sequence:

>601_residues
MIRFLILILVGHLCYGNETNDEKNQISDFLNALHDVKYVSYSKKDFAEFLVQCHKEGVPEDFKKGFGSNLNGANFNQLYL
SKSVFDGVSLIGADFSNTDLSDVSFIDVDLRGANFSNANLHGIKIKGTNLSFTKFVSANLTDIVFDQSNVSYADFISSDL
KKVSMHNVIGLHTNFSNVKMNFSNLSNSNVSHVNFSDSEINDTVMQKNNLNNASFFGVDAYKLKIQFSSLKNANIYGAEL
KESDFTGSNLSDACLNSSIIIDSNFDETNLSNTQISYVNDDNSSFVQSILNGSKIKHAYVSEANLHDADLSNIDFSFSEL
HQVNVSNADIRHGKFHNTKVANSNMNGSFFDHSLFTSAKIEDSDLSTTSMYKIKIQDSQVYNSTLSRHNIDSSEIENSTF
FNLLADNSSWSNLKVTNSNFIESDFRSSLLHANAFRKTSFFLSNLSNSTISDMSFLSSSIYKSSVVDAHLTGCKFDNSIL
IDNQGQEKLTGSENAITSIKDLQEKISQGEKFNVNYSYFEFKDMNLENADFSNSTLSRAKFVNVNLNKANFEKTDLRYTV
FDNSSLIGTNLSNSNLEGSSFLNSDPKSTMLKNAKKNDRKK

Sequences:

>Translated_601_residues
MIRFLILILVGHLCYGNETNDEKNQISDFLNALHDVKYVSYSKKDFAEFLVQCHKEGVPEDFKKGFGSNLNGANFNQLYL
SKSVFDGVSLIGADFSNTDLSDVSFIDVDLRGANFSNANLHGIKIKGTNLSFTKFVSANLTDIVFDQSNVSYADFISSDL
KKVSMHNVIGLHTNFSNVKMNFSNLSNSNVSHVNFSDSEINDTVMQKNNLNNASFFGVDAYKLKIQFSSLKNANIYGAEL
KESDFTGSNLSDACLNSSIIIDSNFDETNLSNTQISYVNDDNSSFVQSILNGSKIKHAYVSEANLHDADLSNIDFSFSEL
HQVNVSNADIRHGKFHNTKVANSNMNGSFFDHSLFTSAKIEDSDLSTTSMYKIKIQDSQVYNSTLSRHNIDSSEIENSTF
FNLLADNSSWSNLKVTNSNFIESDFRSSLLHANAFRKTSFFLSNLSNSTISDMSFLSSSIYKSSVVDAHLTGCKFDNSIL
IDNQGQEKLTGSENAITSIKDLQEKISQGEKFNVNYSYFEFKDMNLENADFSNSTLSRAKFVNVNLNKANFEKTDLRYTV
FDNSSLIGTNLSNSNLEGSSFLNSDPKSTMLKNAKKNDRKK
>Mature_601_residues
MIRFLILILVGHLCYGNETNDEKNQISDFLNALHDVKYVSYSKKDFAEFLVQCHKEGVPEDFKKGFGSNLNGANFNQLYL
SKSVFDGVSLIGADFSNTDLSDVSFIDVDLRGANFSNANLHGIKIKGTNLSFTKFVSANLTDIVFDQSNVSYADFISSDL
KKVSMHNVIGLHTNFSNVKMNFSNLSNSNVSHVNFSDSEINDTVMQKNNLNNASFFGVDAYKLKIQFSSLKNANIYGAEL
KESDFTGSNLSDACLNSSIIIDSNFDETNLSNTQISYVNDDNSSFVQSILNGSKIKHAYVSEANLHDADLSNIDFSFSEL
HQVNVSNADIRHGKFHNTKVANSNMNGSFFDHSLFTSAKIEDSDLSTTSMYKIKIQDSQVYNSTLSRHNIDSSEIENSTF
FNLLADNSSWSNLKVTNSNFIESDFRSSLLHANAFRKTSFFLSNLSNSTISDMSFLSSSIYKSSVVDAHLTGCKFDNSIL
IDNQGQEKLTGSENAITSIKDLQEKISQGEKFNVNYSYFEFKDMNLENADFSNSTLSRAKFVNVNLNKANFEKTDLRYTV
FDNSSLIGTNLSNSNLEGSSFLNSDPKSTMLKNAKKNDRKK

Specific function: Unknown

COG id: COG1357

COG function: function code S; Uncharacterized low-complexity proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 7 pentapeptide repeat domains [H]

Homologues:

Organism=Drosophila melanogaster, GI221377802, Length=162, Percent_Identity=27.1604938271605, Blast_Score=67, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 67010; Mature: 67010

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRFLILILVGHLCYGNETNDEKNQISDFLNALHDVKYVSYSKKDFAEFLVQCHKEGVPE
CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH
DFKKGFGSNLNGANFNQLYLSKSVFDGVSLIGADFSNTDLSDVSFIDVDLRGANFSNANL
HHHHHCCCCCCCCCCHHEEEEHHHHCCHHEEECCCCCCCCCCEEEEEEEEECCCCCCCCE
HGIKIKGTNLSFTKFVSANLTDIVFDQSNVSYADFISSDLKKVSMHNVIGLHTNFSNVKM
EEEEEECCCCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHCEEEEEECCCCEEE
NFSNLSNSNVSHVNFSDSEINDTVMQKNNLNNASFFGVDAYKLKIQFSSLKNANIYGAEL
ECCCCCCCCCEEEECCCCCCCHHHHHCCCCCCCEEEEEEEEEEEEEEECCCCCCEEECCC
KESDFTGSNLSDACLNSSIIIDSNFDETNLSNTQISYVNDDNSSFVQSILNGSKIKHAYV
CCCCCCCCCCHHHHCCCEEEEECCCCCCCCCCCEEEEEECCCHHHHHHHHCCCCEEEEEE
SEANLHDADLSNIDFSFSELHQVNVSNADIRHGKFHNTKVANSNMNGSFFDHSLFTSAKI
CCCCCCCCCCCCCCCCHHHHHEECCCCCCCCCCCCCCCEEECCCCCCCEECHHHHCCCCC
EDSDLSTTSMYKIKIQDSQVYNSTLSRHNIDSSEIENSTFFNLLADNSSWSNLKVTNSNF
CCCCCCCEEEEEEEEECCHHHHHHHHHCCCCHHHCCCCEEEEEEECCCCCCEEEEECCCH
IESDFRSSLLHANAFRKTSFFLSNLSNSTISDMSFLSSSIYKSSVVDAHLTGCKFDNSIL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCCCEEE
IDNQGQEKLTGSENAITSIKDLQEKISQGEKFNVNYSYFEFKDMNLENADFSNSTLSRAK
ECCCCCHHCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCEE
FVNVNLNKANFEKTDLRYTVFDNSSLIGTNLSNSNLEGSSFLNSDPKSTMLKNAKKNDRK
EEEEECCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
K
C
>Mature Secondary Structure
MIRFLILILVGHLCYGNETNDEKNQISDFLNALHDVKYVSYSKKDFAEFLVQCHKEGVPE
CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH
DFKKGFGSNLNGANFNQLYLSKSVFDGVSLIGADFSNTDLSDVSFIDVDLRGANFSNANL
HHHHHCCCCCCCCCCHHEEEEHHHHCCHHEEECCCCCCCCCCEEEEEEEEECCCCCCCCE
HGIKIKGTNLSFTKFVSANLTDIVFDQSNVSYADFISSDLKKVSMHNVIGLHTNFSNVKM
EEEEEECCCCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHCEEEEEECCCCEEE
NFSNLSNSNVSHVNFSDSEINDTVMQKNNLNNASFFGVDAYKLKIQFSSLKNANIYGAEL
ECCCCCCCCCEEEECCCCCCCHHHHHCCCCCCCEEEEEEEEEEEEEEECCCCCCEEECCC
KESDFTGSNLSDACLNSSIIIDSNFDETNLSNTQISYVNDDNSSFVQSILNGSKIKHAYV
CCCCCCCCCCHHHHCCCEEEEECCCCCCCCCCCEEEEEECCCHHHHHHHHCCCCEEEEEE
SEANLHDADLSNIDFSFSELHQVNVSNADIRHGKFHNTKVANSNMNGSFFDHSLFTSAKI
CCCCCCCCCCCCCCCCHHHHHEECCCCCCCCCCCCCCCEEECCCCCCCEECHHHHCCCCC
EDSDLSTTSMYKIKIQDSQVYNSTLSRHNIDSSEIENSTFFNLLADNSSWSNLKVTNSNF
CCCCCCCEEEEEEEEECCHHHHHHHHHCCCCHHHCCCCEEEEEEECCCCCCEEEEECCCH
IESDFRSSLLHANAFRKTSFFLSNLSNSTISDMSFLSSSIYKSSVVDAHLTGCKFDNSIL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCCCEEE
IDNQGQEKLTGSENAITSIKDLQEKISQGEKFNVNYSYFEFKDMNLENADFSNSTLSRAK
ECCCCCHHCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCEE
FVNVNLNKANFEKTDLRYTVFDNSSLIGTNLSNSNLEGSSFLNSDPKSTMLKNAKKNDRK
EEEEECCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
K
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]