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The map label for this gene is nusB [H]

Identifier: 225630058

GI number: 225630058

Start: 236670

End: 237152

Strand: Direct

Name: nusB [H]

Synonym: WRi_002280

Alternate gene names: 225630058

Gene position: 236670-237152 (Clockwise)

Preceding gene: 225630057

Following gene: 225630059

Centisome position: 16.37

GC content: 30.64

Gene sequence:

>483_bases
ATGGAGGAAAAACCAGTAGATAAAAAGTGGCGCATAAAAAGAAGCACGGCAAGATTTCTTGCTGTACAAATTGCTTATTC
AAATATTTTCGTAGGTTACAACAAAAGCACTTTTAAACTGGAAAATTGTGAGCTTAAGGACTACATAAATAAGTTGAAAG
ATATATTTGAATGTGAAGAATTTGAACATCAGTTCTTAGAAAACTTGTTATATAAGGTTATAAAAAGCAGTGAAGAATAT
GATAAAATAATAGAGTCTTATTTACACCCAAGTTGGTCCCTTTCACGGTTAAATCTTATAAGCTTATCTATTTTGCGTGT
TGCAATATGTGAGTTAGCTAATTGTGATACGCCAGTTCCAGTTGTCATTAATGAATATACTAACATTGCATCTGATTTAC
TTGATAAACCAAGCGAAATTGGTTTTATTAATGGGTTATTGGATAAGGCAAAAGATGCAGTTAAATTAAATAAAAATCCT
TAG

Upstream 100 bases:

>100_bases
ATAAAGCACTAGTTAGAGCTGATAAAAACAAAAAGAACGTTGGTGGCCATGCAGCCTCAACTGTTTTGCGTATGATAGAT
TTACACAATAAATTAAAATA

Downstream 100 bases:

>100_bases
CAATTATAGCCAGCAAGCACAAGGTGTCATCCGAGTAGCTGCTGTATGAACATTGTCTACCAGATCCCAGTGCTTGACAC
TGGAATCCAGAAAAATTGAT

Product: N utilization substance protein B, putative

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MEEKPVDKKWRIKRSTARFLAVQIAYSNIFVGYNKSTFKLENCELKDYINKLKDIFECEEFEHQFLENLLYKVIKSSEEY
DKIIESYLHPSWSLSRLNLISLSILRVAICELANCDTPVPVVINEYTNIASDLLDKPSEIGFINGLLDKAKDAVKLNKNP

Sequences:

>Translated_160_residues
MEEKPVDKKWRIKRSTARFLAVQIAYSNIFVGYNKSTFKLENCELKDYINKLKDIFECEEFEHQFLENLLYKVIKSSEEY
DKIIESYLHPSWSLSRLNLISLSILRVAICELANCDTPVPVVINEYTNIASDLLDKPSEIGFINGLLDKAKDAVKLNKNP
>Mature_160_residues
MEEKPVDKKWRIKRSTARFLAVQIAYSNIFVGYNKSTFKLENCELKDYINKLKDIFECEEFEHQFLENLLYKVIKSSEEY
DKIIESYLHPSWSLSRLNLISLSILRVAICELANCDTPVPVVINEYTNIASDLLDKPSEIGFINGLLDKAKDAVKLNKNP

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

None

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 18538; Mature: 18538

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEKPVDKKWRIKRSTARFLAVQIAYSNIFVGYNKSTFKLENCELKDYINKLKDIFECEE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEECCCCHHHHHHHHHHHHHHHH
FEHQFLENLLYKVIKSSEEYDKIIESYLHPSWSLSRLNLISLSILRVAICELANCDTPVP
HHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
VVINEYTNIASDLLDKPSEIGFINGLLDKAKDAVKLNKNP
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MEEKPVDKKWRIKRSTARFLAVQIAYSNIFVGYNKSTFKLENCELKDYINKLKDIFECEE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEECCCCHHHHHHHHHHHHHHHH
FEHQFLENLLYKVIKSSEEYDKIIESYLHPSWSLSRLNLISLSILRVAICELANCDTPVP
HHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
VVINEYTNIASDLLDKPSEIGFINGLLDKAKDAVKLNKNP
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA