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The map label for this gene is yqgF [C]

Identifier: 225629964

GI number: 225629964

Start: 114087

End: 114554

Strand: Direct

Name: yqgF [C]

Synonym: WRi_001100

Alternate gene names: 225629964

Gene position: 114087-114554 (Clockwise)

Preceding gene: 225629963

Following gene: 225629974

Centisome position: 7.89

GC content: 30.98

Gene sequence:

>468_bases
ATGCTACATAGAAATCCAGATGAGTTTCTAAAGTCTATTCCAAAAGATAAGCGCATAATGTGCCTTGACATGGGAGAAAA
GCAAATAGGCATAGCATTTAGCGATAAAACACAGCTCATAGCCACAGCTCATAGCATATATCACAGAAAAAATATGAGCA
AAGATTTAGGTTATCTGCATAGAATATTCAAAGAAAATGAAGCTGGATCAATGGTAATAGGAATACCATTAAACATAGAC
GAGCAAGAAACTAAATGGTGTAAAACCATAATCCAATTTGCAAATAAAATAATAAAAAAATATAAAGTAAATACATACTT
ACAAGACGAGAGCTTATCAACATCTATCGCAACTCATACACTAAAAATTACTGGAATATCAATCACAAAATCGAAAAAAA
TAGATGATAAAATCTCCGCATGTATTATTTTGCAACGAACGTTAGACAAGATAAATACAATCAAATAG

Upstream 100 bases:

>100_bases
TGCATTCCTGAGCAATTTGATTCATTATTCTTTTTGTAAAAAATTTTCTTAACTTTCTCTCCACTTTTTTGGTAAGGTCA
CTTTAAAGGAAGTCTAATAG

Downstream 100 bases:

>100_bases
TTTTTCCAGATCTGGAAATCTTCAAACTGAATCCCATATAAAAGTTACTCAACAAAACAAGAACCTTTCGTATAAGCATG
ACAAATTGCTACAGCAAGAG

Product: putative holliday junction resolvase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MLHRNPDEFLKSIPKDKRIMCLDMGEKQIGIAFSDKTQLIATAHSIYHRKNMSKDLGYLHRIFKENEAGSMVIGIPLNID
EQETKWCKTIIQFANKIIKKYKVNTYLQDESLSTSIATHTLKITGISITKSKKIDDKISACIILQRTLDKINTIK

Sequences:

>Translated_155_residues
MLHRNPDEFLKSIPKDKRIMCLDMGEKQIGIAFSDKTQLIATAHSIYHRKNMSKDLGYLHRIFKENEAGSMVIGIPLNID
EQETKWCKTIIQFANKIIKKYKVNTYLQDESLSTSIATHTLKITGISITKSKKIDDKISACIILQRTLDKINTIK
>Mature_155_residues
MLHRNPDEFLKSIPKDKRIMCLDMGEKQIGIAFSDKTQLIATAHSIYHRKNMSKDLGYLHRIFKENEAGSMVIGIPLNID
EQETKWCKTIIQFANKIIKKYKVNTYLQDESLSTSIATHTLKITGISITKSKKIDDKISACIILQRTLDKINTIK

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 17766; Mature: 17766

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHRNPDEFLKSIPKDKRIMCLDMGEKQIGIAFSDKTQLIATAHSIYHRKNMSKDLGYLH
CCCCCHHHHHHHCCCCCEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHH
RIFKENEAGSMVIGIPLNIDEQETKWCKTIIQFANKIIKKYKVNTYLQDESLSTSIATHT
HHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHEE
LKITGISITKSKKIDDKISACIILQRTLDKINTIK
EEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLHRNPDEFLKSIPKDKRIMCLDMGEKQIGIAFSDKTQLIATAHSIYHRKNMSKDLGYLH
CCCCCHHHHHHHCCCCCEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHH
RIFKENEAGSMVIGIPLNIDEQETKWCKTIIQFANKIIKKYKVNTYLQDESLSTSIATHT
HHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHEE
LKITGISITKSKKIDDKISACIILQRTLDKINTIK
EEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA