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The map label for this gene is virB9 [H]

Identifier: 225629877

GI number: 225629877

Start: 4973

End: 5767

Strand: Direct

Name: virB9 [H]

Synonym: WRi_000060

Alternate gene names: 225629877

Gene position: 4973-5767 (Clockwise)

Preceding gene: 225629876

Following gene: 225629878

Centisome position: 0.34

GC content: 29.56

Gene sequence:

>795_bases
ATGTATAGGATATTATTAGTTTTAGTTTTACTTGTAAGTAGCAATTTAAACGCATCCATTAATTATAATGAACCTATTTC
TGTAGATAGTAGAATAAAGACTTTTGTGTATAGCCCTAATGAAGTATTTACGGTGGTTTTTAGTCAGGGTTACTATTCTT
ATATTGAATTTGCGGAAGGAGAAAAAGTTAAAAATATCGCTGTTGGTGATGCATCAAGTTGGAAAATTAATCCTTATGAC
AATAAATTGCTTATCATGCCATTTGAAGTTAGTAGCCGCACTAACATGATTATTACGACAACTAAAAAAAGAAATTACAT
TTTTGATTTAATCTCAAGGCCAAACTACGATAAATACCCGGATACTGATGCTAAGAAAGTAGATCACGATTATTCTGCTG
AAAAGGATATATCTTACGTAGTACGTTTTTATTATCCTCAAGAAGAAGGTGAATTTGATGTTGATTTAGATGAGGTTTCT
TTACCTACTCAAATGCAATATACTACAGACAAGCTAGAAAAAATAATACAAGAAAATGATACGAAGTACAATTATACATA
TATTGATGAAGGTGGTAATGCGGATATAGTTCCGATTGAGCTATTTGATGATGGTTATTTAACCTATTTAAAATTTAGAA
ATAATAATAAAATACCTCAGATTTTTGTAGAAGAGGAGGATAAACCTTGTAAAAGGCTGTTATTTGATGATTATGTTATA
ATAAAGGGAGTACATAAAAAGCTATTTATGCGTTATGAAGATGGTGAAGTTGAAATTATAAATAGGTCACTTTAG

Upstream 100 bases:

>100_bases
ATTATGTCATATAGATATGCATCGCTTGAAATGAATGATCAGCAAAGATATATTAACCCATTAGGGTTTCAAGTTATTTC
ATATAGAGTAGATGATGAAT

Downstream 100 bases:

>100_bases
CTGTGGTACATGCAATATGAATAAAGAAAGGCGTAACAATTCAGAAGATGAATCAGAAATAGAGAATAAGGTAGTAACAG
TTGGCTCTAATCAAGGTCAT

Product: type IV secretion system protein VirB9

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MYRILLVLVLLVSSNLNASINYNEPISVDSRIKTFVYSPNEVFTVVFSQGYYSYIEFAEGEKVKNIAVGDASSWKINPYD
NKLLIMPFEVSSRTNMIITTTKKRNYIFDLISRPNYDKYPDTDAKKVDHDYSAEKDISYVVRFYYPQEEGEFDVDLDEVS
LPTQMQYTTDKLEKIIQENDTKYNYTYIDEGGNADIVPIELFDDGYLTYLKFRNNNKIPQIFVEEEDKPCKRLLFDDYVI
IKGVHKKLFMRYEDGEVEIINRSL

Sequences:

>Translated_264_residues
MYRILLVLVLLVSSNLNASINYNEPISVDSRIKTFVYSPNEVFTVVFSQGYYSYIEFAEGEKVKNIAVGDASSWKINPYD
NKLLIMPFEVSSRTNMIITTTKKRNYIFDLISRPNYDKYPDTDAKKVDHDYSAEKDISYVVRFYYPQEEGEFDVDLDEVS
LPTQMQYTTDKLEKIIQENDTKYNYTYIDEGGNADIVPIELFDDGYLTYLKFRNNNKIPQIFVEEEDKPCKRLLFDDYVI
IKGVHKKLFMRYEDGEVEIINRSL
>Mature_264_residues
MYRILLVLVLLVSSNLNASINYNEPISVDSRIKTFVYSPNEVFTVVFSQGYYSYIEFAEGEKVKNIAVGDASSWKINPYD
NKLLIMPFEVSSRTNMIITTTKKRNYIFDLISRPNYDKYPDTDAKKVDHDYSAEKDISYVVRFYYPQEEGEFDVDLDEVS
LPTQMQYTTDKLEKIIQENDTKYNYTYIDEGGNADIVPIELFDDGYLTYLKFRNNNKIPQIFVEEEDKPCKRLLFDDYVI
IKGVHKKLFMRYEDGEVEIINRSL

Specific function: Component of the type IV secretion system virB/virD4 which could be a major virulence determinant for subversion of human endothelial cell (HEC) function [H]

COG id: COG3504

COG function: function code U; Type IV secretory pathway, VirB9 components

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbG/virB9 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010258
- InterPro:   IPR014148 [H]

Pfam domain/function: PF03524 CagX [H]

EC number: NA

Molecular weight: Translated: 30997; Mature: 30997

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYRILLVLVLLVSSNLNASINYNEPISVDSRIKTFVYSPNEVFTVVFSQGYYSYIEFAEG
CHHHHHHHHHHHCCCCCEEECCCCCCCCCCCEEEEEECCCEEEEEEECCCCEEEEEECCC
EKVKNIAVGDASSWKINPYDNKLLIMPFEVSSRTNMIITTTKKRNYIFDLISRPNYDKYP
CCEEEEEECCCCCEEECCCCCEEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCCCC
DTDAKKVDHDYSAEKDISYVVRFYYPQEEGEFDVDLDEVSLPTQMQYTTDKLEKIIQEND
CCCHHHCCCCCCCCCCCEEEEEEEECCCCCCEECCHHHCCCCCEEEECHHHHHHHHHCCC
TKYNYTYIDEGGNADIVPIELFDDGYLTYLKFRNNNKIPQIFVEEEDKPCKRLLFDDYVI
CEEEEEEEECCCCCCEEEEEEECCCEEEEEEECCCCCCCEEEEECCCCHHHHHHHCCEEE
IKGVHKKLFMRYEDGEVEIINRSL
EEECCCEEEEEECCCCEEEEECCC
>Mature Secondary Structure
MYRILLVLVLLVSSNLNASINYNEPISVDSRIKTFVYSPNEVFTVVFSQGYYSYIEFAEG
CHHHHHHHHHHHCCCCCEEECCCCCCCCCCCEEEEEECCCEEEEEEECCCCEEEEEECCC
EKVKNIAVGDASSWKINPYDNKLLIMPFEVSSRTNMIITTTKKRNYIFDLISRPNYDKYP
CCEEEEEECCCCCEEECCCCCEEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCCCC
DTDAKKVDHDYSAEKDISYVVRFYYPQEEGEFDVDLDEVSLPTQMQYTTDKLEKIIQEND
CCCHHHCCCCCCCCCCCEEEEEEEECCCCCCEECCHHHCCCCCEEEECHHHHHHHHHCCC
TKYNYTYIDEGGNADIVPIELFDDGYLTYLKFRNNNKIPQIFVEEEDKPCKRLLFDDYVI
CEEEEEEEECCCCCCEEEEEEECCCEEEEEEECCCCCCCEEEEECCCCHHHHHHHCCEEE
IKGVHKKLFMRYEDGEVEIINRSL
EEECCCEEEEEECCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA