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The map label for this gene is 222526942

Identifier: 222526942

GI number: 222526942

Start: 4639217

End: 4640428

Strand: Reverse

Name: 222526942

Synonym: Chy400_3720

Alternate gene names: NA

Gene position: 4640428-4639217 (Counterclockwise)

Preceding gene: 222526943

Following gene: 222526941

Centisome position: 88.07

GC content: 65.26

Gene sequence:

>1212_bases
ATGAACCTGCCCGGCTGGGACGGGTTAAGCCTGGAGGATCGGGTGGCTACCGTCAAACGGGCGTGGGCGATGCCGGTACG
TCGCCTGCTCATCTTCGATAACCTGGAGGACAGGGAACTGCTGGCGCAGTGGCGGCCAAAAACCGGTGGTGGGCAGGTGC
TGGTCACCAGCCGGCGCGGTGACTGGCGGGCAACTGATGGTGTCACCGAATTGCCGTTGCGTCCGCTGGATCGGTCGGCG
AGCTATCAGGTCTTGCTGGGACCACGGGCGTATGAACAGGAACGACCGGTTGAGGCGTTGCTGGCCGATCCGCAGCAGCA
GGCGGCTGCCGATGCGATCTGTGACGAACTGGGAGACCTGCCCCTGGCGCTGGCGCTGGCCGGTGCTTATCTGGCTGACA
ATCCCCGGCTGGCGCTGGCCGACTATCACCGGCGGTTGCAGGAATTGTTACTGGCCGACCCGGCGCTGACTGACGCGATG
GCGGCTGAAGCTGGCCTGCCAACCAGATATCAGCGCGGCGTTGCTGCCGCACTGACCCTGAGCTATGCGCAGCTTACCCC
AGAGAAGGATGCCGCAGCGCTCAGCCTGTTCCACCGGCTGGCCTGGCTGGCCTCGCTACCGATTCCAGAGGCGCTCCTGA
CCGCGCTGAGCGATGGTCAGGCCCCCGATCCGGCCCTGCGTCGGCTGCGGGCAGTTGGGCTGATCGACCGCCGCGAAGTA
CAGCTCCACCGCCTGATTGTTGCCTTTGGCCGTGAGCGTGATCCGGAACTGGCAGTGACTCTCAGTGACACTGTGACGGC
AGTGCTGGCGGCGATGGATGACCAGGACCTGGATCGGATGCCGCTGGCGGGGACACCCTACCGGCCACATCTGGAGGAGC
TGTGCTGGCATACGGATCGGCTGGCGGATGTGCTGGCGGCCCGGCTGCTTATGCAAACAGGCCGGTTGCTCGATATTCAG
GGGGAGTACGCGGCAGCCCGCCCGCTGTTGGAACGGGCGCTGGCGATCCGAGAACGCAGCCTCGGCCCCGACCACCCCGA
TACGGCCACCAGCCTGAACAATCTGGCACTGTGCTTACAGGCGCAGGGGGCGTATGCAGAGGCCCGCCCGCTGTTGGAAC
GGGCGCTGGCGATCCGAGAACGCAGCCTCGGCCCCGACCACCCCGATACTCGCATCATCCGAAAAAATCTGACAGACCTG
AACAAAGAGTAA

Upstream 100 bases:

>100_bases
ACCGGCTCCGTGACCACTTTCCCGGTGGGTCTTCTGGCTGTCGATGGCTAACCCTGAGGACATCCAGGCCCAGGTAGCAC
TCTGCGGCGGGCCTGAGGGG

Downstream 100 bases:

>100_bases
GCAGAACTTGTTATCACATCCCTGGCGGTAATAGCTCTAGTGCAACATAGCATCCGATATGTTGCACTGAAATATACCCG
ACAGAACAGCCAGAAACCTG

Product: tetratricopeptide repeat-containing protein

Products: NA

Alternate protein names: NB-ARC Domain-Containing Protein; Tetratricopeptide Repeat-Containing Protein

Number of amino acids: Translated: 403; Mature: 403

Protein sequence:

>403_residues
MNLPGWDGLSLEDRVATVKRAWAMPVRRLLIFDNLEDRELLAQWRPKTGGGQVLVTSRRGDWRATDGVTELPLRPLDRSA
SYQVLLGPRAYEQERPVEALLADPQQQAAADAICDELGDLPLALALAGAYLADNPRLALADYHRRLQELLLADPALTDAM
AAEAGLPTRYQRGVAAALTLSYAQLTPEKDAAALSLFHRLAWLASLPIPEALLTALSDGQAPDPALRRLRAVGLIDRREV
QLHRLIVAFGRERDPELAVTLSDTVTAVLAAMDDQDLDRMPLAGTPYRPHLEELCWHTDRLADVLAARLLMQTGRLLDIQ
GEYAAARPLLERALAIRERSLGPDHPDTATSLNNLALCLQAQGAYAEARPLLERALAIRERSLGPDHPDTRIIRKNLTDL
NKE

Sequences:

>Translated_403_residues
MNLPGWDGLSLEDRVATVKRAWAMPVRRLLIFDNLEDRELLAQWRPKTGGGQVLVTSRRGDWRATDGVTELPLRPLDRSA
SYQVLLGPRAYEQERPVEALLADPQQQAAADAICDELGDLPLALALAGAYLADNPRLALADYHRRLQELLLADPALTDAM
AAEAGLPTRYQRGVAAALTLSYAQLTPEKDAAALSLFHRLAWLASLPIPEALLTALSDGQAPDPALRRLRAVGLIDRREV
QLHRLIVAFGRERDPELAVTLSDTVTAVLAAMDDQDLDRMPLAGTPYRPHLEELCWHTDRLADVLAARLLMQTGRLLDIQ
GEYAAARPLLERALAIRERSLGPDHPDTATSLNNLALCLQAQGAYAEARPLLERALAIRERSLGPDHPDTRIIRKNLTDL
NKE
>Mature_403_residues
MNLPGWDGLSLEDRVATVKRAWAMPVRRLLIFDNLEDRELLAQWRPKTGGGQVLVTSRRGDWRATDGVTELPLRPLDRSA
SYQVLLGPRAYEQERPVEALLADPQQQAAADAICDELGDLPLALALAGAYLADNPRLALADYHRRLQELLLADPALTDAM
AAEAGLPTRYQRGVAAALTLSYAQLTPEKDAAALSLFHRLAWLASLPIPEALLTALSDGQAPDPALRRLRAVGLIDRREV
QLHRLIVAFGRERDPELAVTLSDTVTAVLAAMDDQDLDRMPLAGTPYRPHLEELCWHTDRLADVLAARLLMQTGRLLDIQ
GEYAAARPLLERALAIRERSLGPDHPDTATSLNNLALCLQAQGAYAEARPLLERALAIRERSLGPDHPDTRIIRKNLTDL
NKE

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI33620730, Length=77, Percent_Identity=51.9480519480519, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI110735431, Length=77, Percent_Identity=51.9480519480519, Blast_Score=84, Evalue=3e-16,
Organism=Homo sapiens, GI194306559, Length=77, Percent_Identity=51.9480519480519, Blast_Score=84, Evalue=3e-16,
Organism=Homo sapiens, GI34304360, Length=97, Percent_Identity=47.4226804123711, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI41871960, Length=82, Percent_Identity=50, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI41871955, Length=82, Percent_Identity=50, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI41871946, Length=82, Percent_Identity=50, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI91825557, Length=81, Percent_Identity=51.8518518518518, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI198041734, Length=81, Percent_Identity=51.8518518518518, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI198041731, Length=81, Percent_Identity=51.8518518518518, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI12383062, Length=81, Percent_Identity=51.8518518518518, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI198041728, Length=81, Percent_Identity=51.8518518518518, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI19923891, Length=73, Percent_Identity=53.4246575342466, Blast_Score=70, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71984517, Length=83, Percent_Identity=49.3975903614458, Blast_Score=85, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI71984527, Length=83, Percent_Identity=49.3975903614458, Blast_Score=85, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI71984524, Length=83, Percent_Identity=49.3975903614458, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI71984535, Length=83, Percent_Identity=49.3975903614458, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI17541458, Length=81, Percent_Identity=44.4444444444444, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI17647555, Length=77, Percent_Identity=53.2467532467532, Blast_Score=84, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44449; Mature: 44449

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLPGWDGLSLEDRVATVKRAWAMPVRRLLIFDNLEDRELLAQWRPKTGGGQVLVTSRRG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCEEEEEECCC
DWRATDGVTELPLRPLDRSASYQVLLGPRAYEQERPVEALLADPQQQAAADAICDELGDL
CCCCCCCCCCCCCCCCCCCCCEEEEECCCHHCCCCCHHHHHCCCHHHHHHHHHHHHHCCC
PLALALAGAYLADNPRLALADYHRRLQELLLADPALTDAMAAEAGLPTRYQRGVAAALTL
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHH
SYAQLTPEKDAAALSLFHRLAWLASLPIPEALLTALSDGQAPDPALRRLRAVGLIDRREV
HHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHH
QLHRLIVAFGRERDPELAVTLSDTVTAVLAAMDDQDLDRMPLAGTPYRPHLEELCWHTDR
HHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
LADVLAARLLMQTGRLLDIQGEYAAARPLLERALAIRERSLGPDHPDTATSLNNLALCLQ
HHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHEEEEE
AQGAYAEARPLLERALAIRERSLGPDHPDTRIIRKNLTDLNKE
CCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNLPGWDGLSLEDRVATVKRAWAMPVRRLLIFDNLEDRELLAQWRPKTGGGQVLVTSRRG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCEEEEEECCC
DWRATDGVTELPLRPLDRSASYQVLLGPRAYEQERPVEALLADPQQQAAADAICDELGDL
CCCCCCCCCCCCCCCCCCCCCEEEEECCCHHCCCCCHHHHHCCCHHHHHHHHHHHHHCCC
PLALALAGAYLADNPRLALADYHRRLQELLLADPALTDAMAAEAGLPTRYQRGVAAALTL
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHH
SYAQLTPEKDAAALSLFHRLAWLASLPIPEALLTALSDGQAPDPALRRLRAVGLIDRREV
HHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHH
QLHRLIVAFGRERDPELAVTLSDTVTAVLAAMDDQDLDRMPLAGTPYRPHLEELCWHTDR
HHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
LADVLAARLLMQTGRLLDIQGEYAAARPLLERALAIRERSLGPDHPDTATSLNNLALCLQ
HHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHEEEEE
AQGAYAEARPLLERALAIRERSLGPDHPDTRIIRKNLTDLNKE
CCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA