BacMap

Definition	Chloroflexus sp. Y-400-fl chromosome, complete genome.
Accession	NC_012032
Length	5,268,950

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The map label for this gene is phnL [H]

Identifier: 222526459

GI number: 222526459

Start: 4027036

End: 4027722

Strand: Reverse

Name: phnL [H]

Synonym: Chy400_3226

Alternate gene names: 222526459

Gene position: 4027722-4027036 (Counterclockwise)

Preceding gene: 222526460

Following gene: 222526458

Centisome position: 76.44

GC content: 54.88

Gene sequence:

>687_bases
ATGCAGCCACTGCTCGAAGTAGACCATCTGGTTAAATCCTTCACCCTGCACCTGATCGACGGTCGCACAATTACACCGGT
GCGCGATGTGAACCTGACAGTGCATGCCGGCGAACACCTTCTCATTTATGGTCGCAGTGGAATGGGCAAAACCAGCATTC
TGAAGTGCATTTATCGCACCTATATCCCCGACGCTGGTCATATCTGGTTTTCCTCAGAACAATTTGGGCGGATTGATCTC
AGACTGGCGGCGGACGATGTCATTTTGCATCTCCGCGAACGCGAAATTGGGTTCTGTTCACAGTTTTTGCGCGTTCTGCC
ACGGGTATCGGCCCTTGACACTATCTGTGAACCGCTCTACCGCCAGGGAATGGATCGCGCCACAGCCAGACACATCGGAC
AGGAATGGCTGGAACGGCTGGGCATTGCCCGGTCGCTATGGCCGGCCAGTCCGGTCACGTTTAGTGGTGGTGAACAGCAA
CGGATCAATCTGGGCCGGGCATTCATTGCCCGACCACGGCTGCTACTGCTCGATGAACCTACTGCCAGTCTTGACGAAGG
AACTAAACGGATCGTGATTGAGATGATCCAGGCTGCCCAACATGATGGGACAGCGATTATCAGTGTCTCTCACGATCTGG
CCGGCCTGGGGGCGTATGCCGACCGTAAGTGGACGTTTAACGAGTGA

Upstream 100 bases:

>100_bases
CATTGTTGAAGCCGGTCTTACCGATCAGATTCTGGAAGACCCGCAGCATCCGTATACACAGTTGCTTGTCTCATCAGCCC
TGTAAAGGTGATCTCAATCT

Downstream 100 bases:

>100_bases
GGTGGTGTGTGCAGTTTCTGCTAGCGAATGCAACCATCGTATTGCCTGACCGGGTAGTCGATAGCGGATGGGTGCTGGTT
GAAAACGGTAAAATCGGCTC

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MQPLLEVDHLVKSFTLHLIDGRTITPVRDVNLTVHAGEHLLIYGRSGMGKTSILKCIYRTYIPDAGHIWFSSEQFGRIDL
RLAADDVILHLREREIGFCSQFLRVLPRVSALDTICEPLYRQGMDRATARHIGQEWLERLGIARSLWPASPVTFSGGEQQ
RINLGRAFIARPRLLLLDEPTASLDEGTKRIVIEMIQAAQHDGTAIISVSHDLAGLGAYADRKWTFNE

Sequences:

>Translated_228_residues
MQPLLEVDHLVKSFTLHLIDGRTITPVRDVNLTVHAGEHLLIYGRSGMGKTSILKCIYRTYIPDAGHIWFSSEQFGRIDL
RLAADDVILHLREREIGFCSQFLRVLPRVSALDTICEPLYRQGMDRATARHIGQEWLERLGIARSLWPASPVTFSGGEQQ
RINLGRAFIARPRLLLLDEPTASLDEGTKRIVIEMIQAAQHDGTAIISVSHDLAGLGAYADRKWTFNE
>Mature_228_residues
MQPLLEVDHLVKSFTLHLIDGRTITPVRDVNLTVHAGEHLLIYGRSGMGKTSILKCIYRTYIPDAGHIWFSSEQFGRIDL
RLAADDVILHLREREIGFCSQFLRVLPRVSALDTICEPLYRQGMDRATARHIGQEWLERLGIARSLWPASPVTFSGGEQQ
RINLGRAFIARPRLLLLDEPTASLDEGTKRIVIEMIQAAQHDGTAIISVSHDLAGLGAYADRKWTFNE

Specific function: Part of the binding-protein-dependent transport system for alkylphosphonates. Probably responsible for energy coupling to the transport system [H]

COG id: COG4778

COG function: function code P; ABC-type phosphonate transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI116734710, Length=208, Percent_Identity=23.5576923076923, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI31657092, Length=209, Percent_Identity=26.3157894736842, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI9961252, Length=196, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI9961250, Length=196, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI4505771, Length=196, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI156105685, Length=188, Percent_Identity=26.063829787234, Blast_Score=67, Evalue=9e-12,
Organism=Homo sapiens, GI255708477, Length=194, Percent_Identity=24.2268041237113, Blast_Score=64, Evalue=8e-11,
Organism=Homo sapiens, GI148612844, Length=194, Percent_Identity=24.2268041237113, Blast_Score=64, Evalue=8e-11,
Organism=Escherichia coli, GI1790534, Length=220, Percent_Identity=39.5454545454545, Blast_Score=167, Evalue=7e-43,
Organism=Escherichia coli, GI1786703, Length=222, Percent_Identity=31.0810810810811, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI87081834, Length=212, Percent_Identity=30.6603773584906, Blast_Score=97, Evalue=6e-22,
Organism=Escherichia coli, GI1789672, Length=201, Percent_Identity=29.8507462686567, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1787029, Length=195, Percent_Identity=27.6923076923077, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1788225, Length=220, Percent_Identity=32.2727272727273, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787500, Length=205, Percent_Identity=29.7560975609756, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1789873, Length=225, Percent_Identity=27.5555555555556, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1788450, Length=211, Percent_Identity=30.8056872037915, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787105, Length=213, Percent_Identity=27.2300469483568, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI87081791, Length=230, Percent_Identity=28.695652173913, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI48994997, Length=230, Percent_Identity=33.0434782608696, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1787089, Length=190, Percent_Identity=32.6315789473684, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1786698, Length=189, Percent_Identity=30.6878306878307, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1787712, Length=206, Percent_Identity=28.6407766990291, Blast_Score=80, Evalue=8e-17,
Organism=Escherichia coli, GI1787370, Length=225, Percent_Identity=27.1111111111111, Blast_Score=80, Evalue=9e-17,
Organism=Escherichia coli, GI1788897, Length=196, Percent_Identity=28.5714285714286, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1789864, Length=240, Percent_Identity=26.6666666666667, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788644, Length=194, Percent_Identity=28.3505154639175, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI145693107, Length=219, Percent_Identity=30.1369863013699, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1786563, Length=192, Percent_Identity=30.7291666666667, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1786398, Length=193, Percent_Identity=25.3886010362694, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788506, Length=220, Percent_Identity=28.6363636363636, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1788761, Length=223, Percent_Identity=28.2511210762332, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790467, Length=196, Percent_Identity=27.5510204081633, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789962, Length=227, Percent_Identity=23.7885462555066, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI87081709, Length=206, Percent_Identity=28.1553398058252, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1789891, Length=198, Percent_Identity=26.7676767676768, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1789032, Length=188, Percent_Identity=25.531914893617, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787164, Length=205, Percent_Identity=30.7317073170732, Blast_Score=74, Evalue=5e-15,
Organism=Escherichia coli, GI1790544, Length=234, Percent_Identity=26.9230769230769, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI48995001, Length=224, Percent_Identity=29.4642857142857, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI48994883, Length=225, Percent_Identity=29.7777777777778, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1789991, Length=230, Percent_Identity=28.2608695652174, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1787112, Length=197, Percent_Identity=28.9340101522843, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787758, Length=198, Percent_Identity=25.2525252525253, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787143, Length=200, Percent_Identity=25.5, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1788053, Length=217, Percent_Identity=28.5714285714286, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1790525, Length=223, Percent_Identity=25.1121076233184, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI1788165, Length=201, Percent_Identity=27.363184079602, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1789593, Length=203, Percent_Identity=26.1083743842365, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1789963, Length=223, Percent_Identity=29.5964125560538, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786872, Length=189, Percent_Identity=26.984126984127, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788472, Length=214, Percent_Identity=26.6355140186916, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787759, Length=242, Percent_Identity=26.4462809917355, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87082267, Length=215, Percent_Identity=25.1162790697674, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1787547, Length=231, Percent_Identity=24.6753246753247, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1787548, Length=238, Percent_Identity=28.5714285714286, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI193202349, Length=216, Percent_Identity=29.6296296296296, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17541710, Length=192, Percent_Identity=28.6458333333333, Blast_Score=67, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6323217, Length=195, Percent_Identity=31.7948717948718, Blast_Score=83, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6322980, Length=210, Percent_Identity=25.2380952380952, Blast_Score=65, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24659289, Length=196, Percent_Identity=26.0204081632653, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24641565, Length=224, Percent_Identity=25, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI85726357, Length=214, Percent_Identity=28.5046728971963, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR012701 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 25680; Mature: 25680

Theoretical pI: Translated: 7.30; Mature: 7.30

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPLLEVDHLVKSFTLHLIDGRTITPVRDVNLTVHAGEHLLIYGRSGMGKTSILKCIYRT
CCCHHHHHHHHHHHHEEEECCCEECCEEECEEEEECCCEEEEEECCCCCHHHHHHHHHHH
YIPDAGHIWFSSEQFGRIDLRLAADDVILHLREREIGFCSQFLRVLPRVSALDTICEPLY
HCCCCCEEEECCCCCCEEEEEEEHHHHHEEHHHCCHHHHHHHHHHHCCHHHHHHHHHHHH
RQGMDRATARHIGQEWLERLGIARSLWPASPVTFSGGEQQRINLGRAFIARPRLLLLDEP
HCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCEEECCCCCHHHHHHHHHHCCCEEEEEECC
TASLDEGTKRIVIEMIQAAQHDGTAIISVSHDLAGLGAYADRKWTFNE
CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MQPLLEVDHLVKSFTLHLIDGRTITPVRDVNLTVHAGEHLLIYGRSGMGKTSILKCIYRT
CCCHHHHHHHHHHHHEEEECCCEECCEEECEEEEECCCEEEEEECCCCCHHHHHHHHHHH
YIPDAGHIWFSSEQFGRIDLRLAADDVILHLREREIGFCSQFLRVLPRVSALDTICEPLY
HCCCCCEEEECCCCCCEEEEEEEHHHHHEEHHHCCHHHHHHHHHHHCCHHHHHHHHHHHH
RQGMDRATARHIGQEWLERLGIARSLWPASPVTFSGGEQQRINLGRAFIARPRLLLLDEP
HCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCEEECCCCCHHHHHHHHHHCCCEEEEEECC
TASLDEGTKRIVIEMIQAAQHDGTAIISVSHDLAGLGAYADRKWTFNE
CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2155230; 1840580; 7610040; 9278503 [H]