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The map label for this gene is yddE [C]

Identifier: 222526341

GI number: 222526341

Start: 3834885

End: 3835760

Strand: Reverse

Name: yddE [C]

Synonym: Chy400_3107

Alternate gene names: 222526341

Gene position: 3835760-3834885 (Counterclockwise)

Preceding gene: 222526342

Following gene: 222526340

Centisome position: 72.8

GC content: 43.49

Gene sequence:

>876_bases
GTGAGAAGATTACCATTCTACATTGTTGATGTCTTCGCTGAACACAAATATACAGGAAACCAGCTTGCAGTATTTCGCGA
AGCAGGAACGCTCTCCGATGATGAAATGCAACACATTGCCCAGGAGATGCATTTCTCGGAAACCACATTTATTGTATCAG
ACCGACCACGTAATGGTGGTTTTGATGTTAGAATTTTTACCCCTGCAGAAGAGATACCTTTTGCAGGCCATCCCACTCTA
GGCACTGCGCATATTATCAATACATATATTCTTCAACGTACCACCGACCAGATCATTCTCAACTTAAAAGTGGGCCAAAT
CCCCGTGACATGTCAAACAGACGGGTATAGCTGGATGCAACAGATGAAACCGGTCTTTGGACACCAGCATGATCCGGAAA
TGATCGCCGGTATCCTTAATATAAACCCTTCCGAACTAGACGAACGATTTCCGATCCAGGAAGTTTCTACCGGTCTTCCC
TTCTTTATTGTGCCATTAAAAACTATCACAGCCTTAAAGAAGGTGAAGATCAACAAAGACAAATATTTTTCTTTTATAGC
AAACACCGCCGCGAAAGCTATTCTTGTCTTTTGTCCCGAGACTCACAATCCAGACAACCATATCAGTGTCAGGGTTTTTA
CCGACTATTATGGTGTCCCCGAAGATCCGGCAACAGGAAGTGCAAACGGATGCCTGGCTGGGTATCTGGTAAAGTATCGC
TATTTTGGCAAAGATAGTATCAATATTCGCAGTGAGCAAGGCTACGAAATCAATCGACCTTCACTTTTACTACTGAGAGC
AGAGCAACATGGCAATGATATTAATATCTTCGTTGGCGGGAAGAGTATTGTGGTCGCACAGGGCGAATTCATCTAA

Upstream 100 bases:

>100_bases
CAGCTCCTCCTTTTTATGATGTATAATCGAAGCAAGGAGCCGATACACCACCAGCTACCAGTGTGACAACATTACTATCA
ATAAATGAAAAGAGAAAGCA

Downstream 100 bases:

>100_bases
CGTGACAAACTGGAATTTGATTGCTACCCATAACCGTATCACCAGAAACCTGATGGTCACGCAGTTTCGTGCTGCACTAC
ATCCATACCGACGAAACCTG

Product: phenazine biosynthesis protein PhzF family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MRRLPFYIVDVFAEHKYTGNQLAVFREAGTLSDDEMQHIAQEMHFSETTFIVSDRPRNGGFDVRIFTPAEEIPFAGHPTL
GTAHIINTYILQRTTDQIILNLKVGQIPVTCQTDGYSWMQQMKPVFGHQHDPEMIAGILNINPSELDERFPIQEVSTGLP
FFIVPLKTITALKKVKINKDKYFSFIANTAAKAILVFCPETHNPDNHISVRVFTDYYGVPEDPATGSANGCLAGYLVKYR
YFGKDSINIRSEQGYEINRPSLLLLRAEQHGNDINIFVGGKSIVVAQGEFI

Sequences:

>Translated_291_residues
MRRLPFYIVDVFAEHKYTGNQLAVFREAGTLSDDEMQHIAQEMHFSETTFIVSDRPRNGGFDVRIFTPAEEIPFAGHPTL
GTAHIINTYILQRTTDQIILNLKVGQIPVTCQTDGYSWMQQMKPVFGHQHDPEMIAGILNINPSELDERFPIQEVSTGLP
FFIVPLKTITALKKVKINKDKYFSFIANTAAKAILVFCPETHNPDNHISVRVFTDYYGVPEDPATGSANGCLAGYLVKYR
YFGKDSINIRSEQGYEINRPSLLLLRAEQHGNDINIFVGGKSIVVAQGEFI
>Mature_291_residues
MRRLPFYIVDVFAEHKYTGNQLAVFREAGTLSDDEMQHIAQEMHFSETTFIVSDRPRNGGFDVRIFTPAEEIPFAGHPTL
GTAHIINTYILQRTTDQIILNLKVGQIPVTCQTDGYSWMQQMKPVFGHQHDPEMIAGILNINPSELDERFPIQEVSTGLP
FFIVPLKTITALKKVKINKDKYFSFIANTAAKAILVFCPETHNPDNHISVRVFTDYYGVPEDPATGSANGCLAGYLVKYR
YFGKDSINIRSEQGYEINRPSLLLLRAEQHGNDINIFVGGKSIVVAQGEFI

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Escherichia coli, GI1787737, Length=294, Percent_Identity=25.8503401360544, Blast_Score=91, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17542158, Length=318, Percent_Identity=25.7861635220126, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17542152, Length=318, Percent_Identity=25.7861635220126, Blast_Score=75, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6321818, Length=302, Percent_Identity=28.1456953642384, Blast_Score=100, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 32771; Mature: 32771

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: PS00178 AA_TRNA_LIGASE_I

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRLPFYIVDVFAEHKYTGNQLAVFREAGTLSDDEMQHIAQEMHFSETTFIVSDRPRNGG
CCCCCEEEEEEEHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCC
FDVRIFTPAEEIPFAGHPTLGTAHIINTYILQRTTDQIILNLKVGQIPVTCQTDGYSWMQ
EEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCEEEEEECCCHHHHH
QMKPVFGHQHDPEMIAGILNINPSELDERFPIQEVSTGLPFFIVPLKTITALKKVKINKD
HHHHHHCCCCCHHHEEEEECCCHHHHHHCCCHHHHHCCCCEEEEHHHHHHHHHHEECCHH
KYFSFIANTAAKAILVFCPETHNPDNHISVRVFTDYYGVPEDPATGSANGCLAGYLVKYR
HHHHHHHHHCCEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHEEEEEE
YFGKDSINIRSEQGYEINRPSLLLLRAEQHGNDINIFVGGKSIVVAQGEFI
EECCCCCEEECCCCCEECCCEEEEEEECCCCCEEEEEECCCEEEEECCCCC
>Mature Secondary Structure
MRRLPFYIVDVFAEHKYTGNQLAVFREAGTLSDDEMQHIAQEMHFSETTFIVSDRPRNGG
CCCCCEEEEEEEHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCC
FDVRIFTPAEEIPFAGHPTLGTAHIINTYILQRTTDQIILNLKVGQIPVTCQTDGYSWMQ
EEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCEEEEEECCCHHHHH
QMKPVFGHQHDPEMIAGILNINPSELDERFPIQEVSTGLPFFIVPLKTITALKKVKINKD
HHHHHHCCCCCHHHEEEEECCCHHHHHHCCCHHHHHCCCCEEEEHHHHHHHHHHEECCHH
KYFSFIANTAAKAILVFCPETHNPDNHISVRVFTDYYGVPEDPATGSANGCLAGYLVKYR
HHHHHHHHHCCEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHEEEEEE
YFGKDSINIRSEQGYEINRPSLLLLRAEQHGNDINIFVGGKSIVVAQGEFI
EECCCCCEEECCCCCEECCCEEEEEEECCCCCEEEEEECCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]