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The map label for this gene is pdtaR [H]

Identifier: 222525937

GI number: 222525937

Start: 3325090

End: 3326364

Strand: Reverse

Name: pdtaR [H]

Synonym: Chy400_2693

Alternate gene names: 222525937

Gene position: 3326364-3325090 (Counterclockwise)

Preceding gene: 222525938

Following gene: 222525936

Centisome position: 63.13

GC content: 53.65

Gene sequence:

>1275_bases
ATGCGAGTCCTGATCGTCGAAGATGAACTGATTATTGCCCAAGACCTTAGTCACACCTTGCGACGAATTGGCCACTCAGT
GATTGATGTTGTTACCAGCGGTGAAGAAGCTCTCCAATCTGTGAGCAAGCATACACCCGACCTGGTATTAATGGATATTC
GCTTAAGTGGTGCTGTTGATGGGATTGAGGCCGCCCGTCATATTCACAGTCGGTGGGGGATTCCGGTCGTCTTTCTGACC
GCCCACGCCGATGATCAGACAGTACGCGAAGCGTTACTGGCCGAGCCATGGGCTTACCTGCTGAAGCCGTTTGACGAGCG
TGAGCTTGAAGTGGCCATCGCCGTTGCCGCCTATAAACATCGGTTGGAACGACGCCTCAGATCGAGTGAACGCCATCTAC
GTACCACATTGACCAGTATCGGCGATGGTGTGATTGTTACCGATCCGCAAAGTCGCATTACCTTTGTCAATCCGGTCGCT
GCCCGCATGCTCGGCATTACCCCGGATGAAGCAATCGGCTGGCCACTGGCTCGCATCTATACCCTGGTCGTTACCCATAC
CGGTTTACCAACCGATAGCACAACATCAAATCAGACAGTGAATGGCCTGCCGGCACCGGTTACCCTGCTTACCCGGAACG
GCGAGCAGTTGTTAGTGGAACATACCATCACCCAAATTACTGCCGATGATGGTACCAATGAAGGGGTCGTGATAGTCTTT
CGTAATGTCAGCGAACGACAACGGGCGATCAATCAGTTACAAGAGGCGAAACGGCAGTTGCATCAGGTTCAACTGCAACT
TGAACAGCAACGACAGTCGATCAATACACTCGGCATACTTGCCCGCACCTTGCGCGAAGTAGCATCGTTACCGGAACTCT
ACACTGCAATTGTGAATGCAGGTGCGACCCTTCTGCCTGACTATCGCGGTACGCTCCTTATCTACAATCCCGAAACAGAC
CTCGTTCACCCCGTCGGCCACTGGGGCGAACCTCTGGTACACCGTCCTGTACGCCGATGTACCTGCTGGGGCGAGCGCCG
CTGGGTACTCAGTCGCACCCACGACGACCATATGTGCCATTTTATCCCGCAAGGGTTACTCGGTGAGCGTATGTGTTTGC
CAATTCAACAGCAACATACTGTCGTTGGTCTCCTGAGTCTGTACCATCAACAGCCGGACAATGGTAATGGTTATCAGGTA
GCCGTCGCCCTGAGCGATCTGGCCAGTCTGGGGCTAAGTGCCTTTGCCCAACGTTTCACATCCGACACACCATGA

Upstream 100 bases:

>100_bases
AATTGTACGAATCTGGCCCAAATTAACGTTGCAACATAATATGCAATAACGCGGTATACTAAAAGTAATATTGTCTTCTC
AGTCTATTGTGAGAAAATAC

Downstream 100 bases:

>100_bases
TGACGCACTGTTTTGGTGAAGGATGTGTCATACTGTTCGACCCGGAATGGGGTACATGCAGGCATTGCCCTACCTGTACC
ACGCTTGTCGCCATATATGA

Product: putative PAS/PAC sensor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 424; Mature: 424

Protein sequence:

>424_residues
MRVLIVEDELIIAQDLSHTLRRIGHSVIDVVTSGEEALQSVSKHTPDLVLMDIRLSGAVDGIEAARHIHSRWGIPVVFLT
AHADDQTVREALLAEPWAYLLKPFDERELEVAIAVAAYKHRLERRLRSSERHLRTTLTSIGDGVIVTDPQSRITFVNPVA
ARMLGITPDEAIGWPLARIYTLVVTHTGLPTDSTTSNQTVNGLPAPVTLLTRNGEQLLVEHTITQITADDGTNEGVVIVF
RNVSERQRAINQLQEAKRQLHQVQLQLEQQRQSINTLGILARTLREVASLPELYTAIVNAGATLLPDYRGTLLIYNPETD
LVHPVGHWGEPLVHRPVRRCTCWGERRWVLSRTHDDHMCHFIPQGLLGERMCLPIQQQHTVVGLLSLYHQQPDNGNGYQV
AVALSDLASLGLSAFAQRFTSDTP

Sequences:

>Translated_424_residues
MRVLIVEDELIIAQDLSHTLRRIGHSVIDVVTSGEEALQSVSKHTPDLVLMDIRLSGAVDGIEAARHIHSRWGIPVVFLT
AHADDQTVREALLAEPWAYLLKPFDERELEVAIAVAAYKHRLERRLRSSERHLRTTLTSIGDGVIVTDPQSRITFVNPVA
ARMLGITPDEAIGWPLARIYTLVVTHTGLPTDSTTSNQTVNGLPAPVTLLTRNGEQLLVEHTITQITADDGTNEGVVIVF
RNVSERQRAINQLQEAKRQLHQVQLQLEQQRQSINTLGILARTLREVASLPELYTAIVNAGATLLPDYRGTLLIYNPETD
LVHPVGHWGEPLVHRPVRRCTCWGERRWVLSRTHDDHMCHFIPQGLLGERMCLPIQQQHTVVGLLSLYHQQPDNGNGYQV
AVALSDLASLGLSAFAQRFTSDTP
>Mature_424_residues
MRVLIVEDELIIAQDLSHTLRRIGHSVIDVVTSGEEALQSVSKHTPDLVLMDIRLSGAVDGIEAARHIHSRWGIPVVFLT
AHADDQTVREALLAEPWAYLLKPFDERELEVAIAVAAYKHRLERRLRSSERHLRTTLTSIGDGVIVTDPQSRITFVNPVA
ARMLGITPDEAIGWPLARIYTLVVTHTGLPTDSTTSNQTVNGLPAPVTLLTRNGEQLLVEHTITQITADDGTNEGVVIVF
RNVSERQRAINQLQEAKRQLHQVQLQLEQQRQSINTLGILARTLREVASLPELYTAIVNAGATLLPDYRGTLLIYNPETD
LVHPVGHWGEPLVHRPVRRCTCWGERRWVLSRTHDDHMCHFIPQGLLGERMCLPIQQQHTVVGLLSLYHQQPDNGNGYQV
AVALSDLASLGLSAFAQRFTSDTP

Specific function: Member of the two-component regulatory system pdtaR/pdtaS [H]

COG id: COG0784

COG function: function code T; FOG: CheY-like receiver

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788381, Length=149, Percent_Identity=32.8859060402685, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788550, Length=136, Percent_Identity=33.0882352941176, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005561
- InterPro:   IPR011006
- InterPro:   IPR008327
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03861 ANTAR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 47260; Mature: 47260

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVLIVEDELIIAQDLSHTLRRIGHSVIDVVTSGEEALQSVSKHTPDLVLMDIRLSGAVD
CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEEEECCCHH
GIEAARHIHSRWGIPVVFLTAHADDQTVREALLAEPWAYLLKPFDERELEVAIAVAAYKH
HHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHH
RLERRLRSSERHLRTTLTSIGDGVIVTDPQSRITFVNPVAARMLGITPDEAIGWPLARIY
HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCHHHCCCHHHHH
TLVVTHTGLPTDSTTSNQTVNGLPAPVTLLTRNGEQLLVEHTITQITADDGTNEGVVIVF
HHHHEECCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEHHHHEEECCCCCCCCEEEEE
RNVSERQRAINQLQEAKRQLHQVQLQLEQQRQSINTLGILARTLREVASLPELYTAIVNA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GATLLPDYRGTLLIYNPETDLVHPVGHWGEPLVHRPVRRCTCWGERRWVLSRTHDDHMCH
CCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHH
FIPQGLLGERMCLPIQQQHTVVGLLSLYHQQPDNGNGYQVAVALSDLASLGLSAFAQRFT
HCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHC
SDTP
CCCC
>Mature Secondary Structure
MRVLIVEDELIIAQDLSHTLRRIGHSVIDVVTSGEEALQSVSKHTPDLVLMDIRLSGAVD
CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEEEECCCHH
GIEAARHIHSRWGIPVVFLTAHADDQTVREALLAEPWAYLLKPFDERELEVAIAVAAYKH
HHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHH
RLERRLRSSERHLRTTLTSIGDGVIVTDPQSRITFVNPVAARMLGITPDEAIGWPLARIY
HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCCCHHHCCCHHHHH
TLVVTHTGLPTDSTTSNQTVNGLPAPVTLLTRNGEQLLVEHTITQITADDGTNEGVVIVF
HHHHEECCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEHHHHEEECCCCCCCCEEEEE
RNVSERQRAINQLQEAKRQLHQVQLQLEQQRQSINTLGILARTLREVASLPELYTAIVNA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GATLLPDYRGTLLIYNPETDLVHPVGHWGEPLVHRPVRRCTCWGERRWVLSRTHDDHMCH
CCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHH
FIPQGLLGERMCLPIQQQHTVVGLLSLYHQQPDNGNGYQVAVALSDLASLGLSAFAQRFT
HCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHC
SDTP
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]