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The map label for this gene is gatR [H]

Identifier: 222525716

GI number: 222525716

Start: 3113766

End: 3114548

Strand: Reverse

Name: gatR [H]

Synonym: Chy400_2467

Alternate gene names: 222525716

Gene position: 3114548-3113766 (Counterclockwise)

Preceding gene: 222525729

Following gene: 222525715

Centisome position: 59.11

GC content: 56.32

Gene sequence:

>783_bases
ATGACAGATCACAGCAATGATGCGCTTCCGCCAGAAGTACGGCGTGATCAGATTATGGCCTTGCTCCAGCGCTACGGTCA
GATCACTGTGAAGTGGTGTGCCGAGCAGCTCGGTGTTTCTGAGGTGACGATTCGGAGCGATTTTGCCATTCTCGAACGCG
AGGGTATGCTGCGCCGGGTGTGGGGTGGGGCTGTTTTGGATCGACCGCTCTGGCCTGAAGGCAGTTTCGCTTCGCGTTTG
AAGCAGCAGGCAGCCGAGAAGGAGCGGATTGCCCGTATTGCGGCTGAGTTGATCGTCGATGGTGATACGGTGATGCTCGA
TGCCAGTACGACGGCCTATGCGATTGCCCGTCAGATTGCGGATCGCCGTAATTTGACGGTCATTACGAATGGGATGCATC
TGGCGCTGGCGTTGGGCGCTAATCCGGCAATTACGACGATTGTGATCGGTGGGCAGGTGCGCGGTGATACCGGTTCGCTC
ACCGGTACGCTGGCCGAAGAGATGTTGCAACGACTGCACGCTGATAAGGGTTTTTTTTCGGCACGTGGTCTGACTGTGGC
GAAAGGTTTGACCGAAAGTTCTATTCCCGAAGGGTTGCTGAAAGCTGAGATGGTGCGCCACGTGGATCGGGTGATTGCGG
TGCTTGATAGCAGTAAGCTCGGTCAGACGGCGTTGACCAGCTTTTGTCCGGTGGATGCGATTCACCATTTGATTACCGCC
GGGCCGGATGCTCCGGAGCGGAGTGCACCGTTTACCGGTTTTTTTCCGATCACGATTGTGTAG

Upstream 100 bases:

>100_bases
CCACTAAATTCGTAAAATCTCGTAAGTACTTGACAAATCTTGAAAATCACTATAGACTATGGAAACCATTCCCGATAAGT
ATCGAACGGGGCAATCGTGT

Downstream 100 bases:

>100_bases
TGAGGGTTGTATGCAGGTTTCGCCGGTGCTTGAGATACGCGATATTTCGCGGCGGTTCGGTAATACGCAGGCGCTCGATG
GCGTCAGTTTGCGGTTGTAT

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MTDHSNDALPPEVRRDQIMALLQRYGQITVKWCAEQLGVSEVTIRSDFAILEREGMLRRVWGGAVLDRPLWPEGSFASRL
KQQAAEKERIARIAAELIVDGDTVMLDASTTAYAIARQIADRRNLTVITNGMHLALALGANPAITTIVIGGQVRGDTGSL
TGTLAEEMLQRLHADKGFFSARGLTVAKGLTESSIPEGLLKAEMVRHVDRVIAVLDSSKLGQTALTSFCPVDAIHHLITA
GPDAPERSAPFTGFFPITIV

Sequences:

>Translated_260_residues
MTDHSNDALPPEVRRDQIMALLQRYGQITVKWCAEQLGVSEVTIRSDFAILEREGMLRRVWGGAVLDRPLWPEGSFASRL
KQQAAEKERIARIAAELIVDGDTVMLDASTTAYAIARQIADRRNLTVITNGMHLALALGANPAITTIVIGGQVRGDTGSL
TGTLAEEMLQRLHADKGFFSARGLTVAKGLTESSIPEGLLKAEMVRHVDRVIAVLDSSKLGQTALTSFCPVDAIHHLITA
GPDAPERSAPFTGFFPITIV
>Mature_259_residues
TDHSNDALPPEVRRDQIMALLQRYGQITVKWCAEQLGVSEVTIRSDFAILEREGMLRRVWGGAVLDRPLWPEGSFASRLK
QQAAEKERIARIAAELIVDGDTVMLDASTTAYAIARQIADRRNLTVITNGMHLALALGANPAITTIVIGGQVRGDTGSLT
GTLAEEMLQRLHADKGFFSARGLTVAKGLTESSIPEGLLKAEMVRHVDRVIAVLDSSKLGQTALTSFCPVDAIHHLITAG
PDAPERSAPFTGFFPITIV

Specific function: Repressor of the gat operon for galacticol transport and metabolism [H]

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789519, Length=227, Percent_Identity=33.0396475770925, Blast_Score=120, Evalue=6e-29,
Organism=Escherichia coli, GI1789059, Length=243, Percent_Identity=31.6872427983539, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1788069, Length=229, Percent_Identity=31.8777292576419, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1789829, Length=233, Percent_Identity=28.3261802575107, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1790635, Length=240, Percent_Identity=31.25, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1790753, Length=209, Percent_Identity=28.7081339712919, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI226510968, Length=229, Percent_Identity=29.6943231441048, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787540, Length=233, Percent_Identity=29.1845493562232, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI87082344, Length=226, Percent_Identity=27.8761061946903, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1789170, Length=228, Percent_Identity=29.8245614035088, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787063, Length=216, Percent_Identity=27.7777777777778, Blast_Score=75, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 28151; Mature: 28020

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDHSNDALPPEVRRDQIMALLQRYGQITVKWCAEQLGVSEVTIRSDFAILEREGMLRRV
CCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEECCCHHHHHHCCHHHHH
WGGAVLDRPLWPEGSFASRLKQQAAEKERIARIAAELIVDGDTVMLDASTTAYAIARQIA
HCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
DRRNLTVITNGMHLALALGANPAITTIVIGGQVRGDTGSLTGTLAEEMLQRLHADKGFFS
CCCCEEEEECCEEEEEEECCCCCEEEEEECCEEECCCCCHHHHHHHHHHHHHHCCCCCCC
ARGLTVAKGLTESSIPEGLLKAEMVRHVDRVIAVLDSSKLGQTALTSFCPVDAIHHLITA
CCCCHHHCCCCHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHC
GPDAPERSAPFTGFFPITIV
CCCCCCCCCCCCCCEEEEEC
>Mature Secondary Structure 
TDHSNDALPPEVRRDQIMALLQRYGQITVKWCAEQLGVSEVTIRSDFAILEREGMLRRV
CCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEECCCHHHHHHCCHHHHH
WGGAVLDRPLWPEGSFASRLKQQAAEKERIARIAAELIVDGDTVMLDASTTAYAIARQIA
HCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
DRRNLTVITNGMHLALALGANPAITTIVIGGQVRGDTGSLTGTLAEEMLQRLHADKGFFS
CCCCEEEEECCEEEEEEECCCCCEEEEEECCEEECCCCCHHHHHHHHHHHHHHCCCCCCC
ARGLTVAKGLTESSIPEGLLKAEMVRHVDRVIAVLDSSKLGQTALTSFCPVDAIHHLITA
CCCCHHHCCCCHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHC
GPDAPERSAPFTGFFPITIV
CCCCCCCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503; 7772602; 1661252 [H]