Definition Chloroflexus sp. Y-400-fl chromosome, complete genome.
Accession NC_012032
Length 5,268,950

Click here to switch to the map view.

The map label for this gene is 222525697

Identifier: 222525697

GI number: 222525697

Start: 3090338

End: 3091813

Strand: Direct

Name: 222525697

Synonym: Chy400_2448

Alternate gene names: NA

Gene position: 3090338-3091813 (Clockwise)

Preceding gene: 222525696

Following gene: 222525698

Centisome position: 58.65

GC content: 54.88

Gene sequence:

>1476_bases
ATGAGTACGCATCCCCTGGCAACATCTCGCCAGATCAGCGAACGCTGGATCATCGAGGGTGATCTGGTGTTGCAGACCCC
AACCCACCTGGGCAATGGTGATACTGATGGCATTGTGGATATGCCACTGTTGCTGGACGAAGTGACCGGAAAAGCACTGC
TACCGGGCACGTCGCTGGCGGGTGCGCTGCGCAACTATTTATATGAGCGCTGCCACGGTTTTGAGAAACAGGCATCGGAC
CCATGGATTGAAGCGCTTTTCGGTGGGCAGAAGGGCAACGACGATGGTGATCAGAGCGCATTGATTATCGATGATGCCCT
GGGTGAGGCATCAAAGATCGAGCTGCGTGATGGGGTGCGCATTGATCCGATAACGCGCACTGCGAAAGTTGATTTCGATA
ATGGTGTTCCGCGTGGTTACAAGTACGATCTTCAGCTCCTGGAAGCCGGTACGACTTTCCCTATTCGGATGGAACTGCTT
CTCAGTCAGGGTAACAATCAGCAGCAGGTAAAACAAATGCTTGTCCTCGCTCTTCAGGGGCTTGAGGCAGGTGAGATAGC
CATCGGGCTACGGAAGCGACGCGGTTTTGGCGTGTGTCGGGTTACGCAATGGCGTGTTACCCGTTACGATCTCACAAAGC
CTGCCGGTTTGCTGGCCTGGTTAGCAGAAGATCATCCTGACTGGAAATACGCCACCGGTAGTGAACGGCGATCTGGTCAG
AGCATTGCCGGTCTCCTGAATGTGACTCTCGCGGATAGTAGCGACAAGCGTAGCTTTTGCCGGATTCGGGCACAGTTCGT
CGTTGACGGTTCCATCCTGATCCGTGCCGGGTTCGATGAACAGGATCGTGGCCCGGATACCGTACACCTGCATAGCGCCC
GGCCAGGTGGAACACGCAAGCCGGTTCTTTCAGGTACCAGCCTGGCGGGCGCGTTACGCCATCGTGCCGGGCGCATTCTG
CGCACAATTGCCGATGATAAGCAGGCCCAGACCATGATTGACAGTATCTTCGGCCCTGCCGAGATCACTGGCGACAAAAA
ACAAAAGGCTCGCTCCAGTCGCCTCGTTGTCAACGAAACGGTGATCGAGAACCCGGTGAATCTGGTACAGAACCGTATTC
GCATTGACCGTTTTACCGGCAGCGTCCATGGAACGGGTTTATTCAATGAACAGCCGGTCTTTGGTAAGAACGACACCCTT
GTCACCGTTGATCTGACGCTCCGCAACCCTGAAAATGCCGAAATCGGATTGTTGCTGTTACTGCTCAAAGATCTGTGGAC
CGGTGACTTACCGCTGGGAGGTGAAGCCGGCATCGGTCGCGGACGATTGAAGGGTGTAAGTGCAGAGATTGAAACACCGC
AGCACAAAGGTAAGCCACTCACAATCAGCCTTGCAGACGGCAAACGTCTGATTCCGAGTGACCGTGATGCTCTTGAGCAT
TACGTTGCAGCCTTGCACGCGGAGGTAAAGCGATGA

Upstream 100 bases:

>100_bases
GGGACGATACAGAGTTGGCCCGTGAGTACACGATCCGCCTGATCGACGGTGTTCTCGCCAGACTGGCAAAAGAGCGCCGC
AGGGAAGATGGAGGCCGTCA

Downstream 100 bases:

>100_bases
CGAAGATCTCCTACCAGCTTACCGGTGTTCCTGTGGACGATGAATTCAACACCGATCCGGCTGCCTGGATGGTGAAACAT
GCGCAGCAGTATAACCTGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 491; Mature: 490

Protein sequence:

>491_residues
MSTHPLATSRQISERWIIEGDLVLQTPTHLGNGDTDGIVDMPLLLDEVTGKALLPGTSLAGALRNYLYERCHGFEKQASD
PWIEALFGGQKGNDDGDQSALIIDDALGEASKIELRDGVRIDPITRTAKVDFDNGVPRGYKYDLQLLEAGTTFPIRMELL
LSQGNNQQQVKQMLVLALQGLEAGEIAIGLRKRRGFGVCRVTQWRVTRYDLTKPAGLLAWLAEDHPDWKYATGSERRSGQ
SIAGLLNVTLADSSDKRSFCRIRAQFVVDGSILIRAGFDEQDRGPDTVHLHSARPGGTRKPVLSGTSLAGALRHRAGRIL
RTIADDKQAQTMIDSIFGPAEITGDKKQKARSSRLVVNETVIENPVNLVQNRIRIDRFTGSVHGTGLFNEQPVFGKNDTL
VTVDLTLRNPENAEIGLLLLLLKDLWTGDLPLGGEAGIGRGRLKGVSAEIETPQHKGKPLTISLADGKRLIPSDRDALEH
YVAALHAEVKR

Sequences:

>Translated_491_residues
MSTHPLATSRQISERWIIEGDLVLQTPTHLGNGDTDGIVDMPLLLDEVTGKALLPGTSLAGALRNYLYERCHGFEKQASD
PWIEALFGGQKGNDDGDQSALIIDDALGEASKIELRDGVRIDPITRTAKVDFDNGVPRGYKYDLQLLEAGTTFPIRMELL
LSQGNNQQQVKQMLVLALQGLEAGEIAIGLRKRRGFGVCRVTQWRVTRYDLTKPAGLLAWLAEDHPDWKYATGSERRSGQ
SIAGLLNVTLADSSDKRSFCRIRAQFVVDGSILIRAGFDEQDRGPDTVHLHSARPGGTRKPVLSGTSLAGALRHRAGRIL
RTIADDKQAQTMIDSIFGPAEITGDKKQKARSSRLVVNETVIENPVNLVQNRIRIDRFTGSVHGTGLFNEQPVFGKNDTL
VTVDLTLRNPENAEIGLLLLLLKDLWTGDLPLGGEAGIGRGRLKGVSAEIETPQHKGKPLTISLADGKRLIPSDRDALEH
YVAALHAEVKR
>Mature_490_residues
STHPLATSRQISERWIIEGDLVLQTPTHLGNGDTDGIVDMPLLLDEVTGKALLPGTSLAGALRNYLYERCHGFEKQASDP
WIEALFGGQKGNDDGDQSALIIDDALGEASKIELRDGVRIDPITRTAKVDFDNGVPRGYKYDLQLLEAGTTFPIRMELLL
SQGNNQQQVKQMLVLALQGLEAGEIAIGLRKRRGFGVCRVTQWRVTRYDLTKPAGLLAWLAEDHPDWKYATGSERRSGQS
IAGLLNVTLADSSDKRSFCRIRAQFVVDGSILIRAGFDEQDRGPDTVHLHSARPGGTRKPVLSGTSLAGALRHRAGRILR
TIADDKQAQTMIDSIFGPAEITGDKKQKARSSRLVVNETVIENPVNLVQNRIRIDRFTGSVHGTGLFNEQPVFGKNDTLV
TVDLTLRNPENAEIGLLLLLLKDLWTGDLPLGGEAGIGRGRLKGVSAEIETPQHKGKPLTISLADGKRLIPSDRDALEHY
VAALHAEVKR

Specific function: Unknown

COG id: COG1336

COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53738; Mature: 53607

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTHPLATSRQISERWIIEGDLVLQTPTHLGNGDTDGIVDMPLLLDEVTGKALLPGTSLA
CCCCCCCCCHHHCCEEEEECCEEEECCCCCCCCCCCCEEEHHHHHHHHCCCEECCCCHHH
GALRNYLYERCHGFEKQASDPWIEALFGGQKGNDDGDQSALIIDDALGEASKIELRDGVR
HHHHHHHHHHHCCCHHCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEEECCCCE
IDPITRTAKVDFDNGVPRGYKYDLQLLEAGTTFPIRMELLLSQGNNQQQVKQMLVLALQG
ECCCCCEEEEECCCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHCC
LEAGEIAIGLRKRRGFGVCRVTQWRVTRYDLTKPAGLLAWLAEDHPDWKYATGSERRSGQ
CCCCCEEEEEECCCCCCEEEEEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCC
SIAGLLNVTLADSSDKRSFCRIRAQFVVDGSILIRAGFDEQDRGPDTVHLHSARPGGTRK
CEEEEEEEEEECCCCCCHHHEEEEEEEECCEEEEEECCCCCCCCCCEEEEECCCCCCCCC
PVLSGTSLAGALRHRAGRILRTIADDKQAQTMIDSIFGPAEITGDKKQKARSSRLVVNET
CCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHCCCCHHHHHHHCCEEEEHH
VIENPVNLVQNRIRIDRFTGSVHGTGLFNEQPVFGKNDTLVTVDLTLRNPENAEIGLLLL
HHHCHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHH
LLKDLWTGDLPLGGEAGIGRGRLKGVSAEIETPQHKGKPLTISLADGKRLIPSDRDALEH
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHH
YVAALHAEVKR
HHHHHHHHHCC
>Mature Secondary Structure 
STHPLATSRQISERWIIEGDLVLQTPTHLGNGDTDGIVDMPLLLDEVTGKALLPGTSLA
CCCCCCCCHHHCCEEEEECCEEEECCCCCCCCCCCCEEEHHHHHHHHCCCEECCCCHHH
GALRNYLYERCHGFEKQASDPWIEALFGGQKGNDDGDQSALIIDDALGEASKIELRDGVR
HHHHHHHHHHHCCCHHCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEEECCCCE
IDPITRTAKVDFDNGVPRGYKYDLQLLEAGTTFPIRMELLLSQGNNQQQVKQMLVLALQG
ECCCCCEEEEECCCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHCC
LEAGEIAIGLRKRRGFGVCRVTQWRVTRYDLTKPAGLLAWLAEDHPDWKYATGSERRSGQ
CCCCCEEEEEECCCCCCEEEEEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCC
SIAGLLNVTLADSSDKRSFCRIRAQFVVDGSILIRAGFDEQDRGPDTVHLHSARPGGTRK
CEEEEEEEEEECCCCCCHHHEEEEEEEECCEEEEEECCCCCCCCCCEEEEECCCCCCCCC
PVLSGTSLAGALRHRAGRILRTIADDKQAQTMIDSIFGPAEITGDKKQKARSSRLVVNET
CCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHCCCCHHHHHHHCCEEEEHH
VIENPVNLVQNRIRIDRFTGSVHGTGLFNEQPVFGKNDTLVTVDLTLRNPENAEIGLLLL
HHHCHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHH
LLKDLWTGDLPLGGEAGIGRGRLKGVSAEIETPQHKGKPLTISLADGKRLIPSDRDALEH
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHH
YVAALHAEVKR
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA