| Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
|---|---|
| Accession | NC_012032 |
| Length | 5,268,950 |
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The map label for this gene is 222525697
Identifier: 222525697
GI number: 222525697
Start: 3090338
End: 3091813
Strand: Direct
Name: 222525697
Synonym: Chy400_2448
Alternate gene names: NA
Gene position: 3090338-3091813 (Clockwise)
Preceding gene: 222525696
Following gene: 222525698
Centisome position: 58.65
GC content: 54.88
Gene sequence:
>1476_bases ATGAGTACGCATCCCCTGGCAACATCTCGCCAGATCAGCGAACGCTGGATCATCGAGGGTGATCTGGTGTTGCAGACCCC AACCCACCTGGGCAATGGTGATACTGATGGCATTGTGGATATGCCACTGTTGCTGGACGAAGTGACCGGAAAAGCACTGC TACCGGGCACGTCGCTGGCGGGTGCGCTGCGCAACTATTTATATGAGCGCTGCCACGGTTTTGAGAAACAGGCATCGGAC CCATGGATTGAAGCGCTTTTCGGTGGGCAGAAGGGCAACGACGATGGTGATCAGAGCGCATTGATTATCGATGATGCCCT GGGTGAGGCATCAAAGATCGAGCTGCGTGATGGGGTGCGCATTGATCCGATAACGCGCACTGCGAAAGTTGATTTCGATA ATGGTGTTCCGCGTGGTTACAAGTACGATCTTCAGCTCCTGGAAGCCGGTACGACTTTCCCTATTCGGATGGAACTGCTT CTCAGTCAGGGTAACAATCAGCAGCAGGTAAAACAAATGCTTGTCCTCGCTCTTCAGGGGCTTGAGGCAGGTGAGATAGC CATCGGGCTACGGAAGCGACGCGGTTTTGGCGTGTGTCGGGTTACGCAATGGCGTGTTACCCGTTACGATCTCACAAAGC CTGCCGGTTTGCTGGCCTGGTTAGCAGAAGATCATCCTGACTGGAAATACGCCACCGGTAGTGAACGGCGATCTGGTCAG AGCATTGCCGGTCTCCTGAATGTGACTCTCGCGGATAGTAGCGACAAGCGTAGCTTTTGCCGGATTCGGGCACAGTTCGT CGTTGACGGTTCCATCCTGATCCGTGCCGGGTTCGATGAACAGGATCGTGGCCCGGATACCGTACACCTGCATAGCGCCC GGCCAGGTGGAACACGCAAGCCGGTTCTTTCAGGTACCAGCCTGGCGGGCGCGTTACGCCATCGTGCCGGGCGCATTCTG CGCACAATTGCCGATGATAAGCAGGCCCAGACCATGATTGACAGTATCTTCGGCCCTGCCGAGATCACTGGCGACAAAAA ACAAAAGGCTCGCTCCAGTCGCCTCGTTGTCAACGAAACGGTGATCGAGAACCCGGTGAATCTGGTACAGAACCGTATTC GCATTGACCGTTTTACCGGCAGCGTCCATGGAACGGGTTTATTCAATGAACAGCCGGTCTTTGGTAAGAACGACACCCTT GTCACCGTTGATCTGACGCTCCGCAACCCTGAAAATGCCGAAATCGGATTGTTGCTGTTACTGCTCAAAGATCTGTGGAC CGGTGACTTACCGCTGGGAGGTGAAGCCGGCATCGGTCGCGGACGATTGAAGGGTGTAAGTGCAGAGATTGAAACACCGC AGCACAAAGGTAAGCCACTCACAATCAGCCTTGCAGACGGCAAACGTCTGATTCCGAGTGACCGTGATGCTCTTGAGCAT TACGTTGCAGCCTTGCACGCGGAGGTAAAGCGATGA
Upstream 100 bases:
>100_bases GGGACGATACAGAGTTGGCCCGTGAGTACACGATCCGCCTGATCGACGGTGTTCTCGCCAGACTGGCAAAAGAGCGCCGC AGGGAAGATGGAGGCCGTCA
Downstream 100 bases:
>100_bases CGAAGATCTCCTACCAGCTTACCGGTGTTCCTGTGGACGATGAATTCAACACCGATCCGGCTGCCTGGATGGTGAAACAT GCGCAGCAGTATAACCTGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 491; Mature: 490
Protein sequence:
>491_residues MSTHPLATSRQISERWIIEGDLVLQTPTHLGNGDTDGIVDMPLLLDEVTGKALLPGTSLAGALRNYLYERCHGFEKQASD PWIEALFGGQKGNDDGDQSALIIDDALGEASKIELRDGVRIDPITRTAKVDFDNGVPRGYKYDLQLLEAGTTFPIRMELL LSQGNNQQQVKQMLVLALQGLEAGEIAIGLRKRRGFGVCRVTQWRVTRYDLTKPAGLLAWLAEDHPDWKYATGSERRSGQ SIAGLLNVTLADSSDKRSFCRIRAQFVVDGSILIRAGFDEQDRGPDTVHLHSARPGGTRKPVLSGTSLAGALRHRAGRIL RTIADDKQAQTMIDSIFGPAEITGDKKQKARSSRLVVNETVIENPVNLVQNRIRIDRFTGSVHGTGLFNEQPVFGKNDTL VTVDLTLRNPENAEIGLLLLLLKDLWTGDLPLGGEAGIGRGRLKGVSAEIETPQHKGKPLTISLADGKRLIPSDRDALEH YVAALHAEVKR
Sequences:
>Translated_491_residues MSTHPLATSRQISERWIIEGDLVLQTPTHLGNGDTDGIVDMPLLLDEVTGKALLPGTSLAGALRNYLYERCHGFEKQASD PWIEALFGGQKGNDDGDQSALIIDDALGEASKIELRDGVRIDPITRTAKVDFDNGVPRGYKYDLQLLEAGTTFPIRMELL LSQGNNQQQVKQMLVLALQGLEAGEIAIGLRKRRGFGVCRVTQWRVTRYDLTKPAGLLAWLAEDHPDWKYATGSERRSGQ SIAGLLNVTLADSSDKRSFCRIRAQFVVDGSILIRAGFDEQDRGPDTVHLHSARPGGTRKPVLSGTSLAGALRHRAGRIL RTIADDKQAQTMIDSIFGPAEITGDKKQKARSSRLVVNETVIENPVNLVQNRIRIDRFTGSVHGTGLFNEQPVFGKNDTL VTVDLTLRNPENAEIGLLLLLLKDLWTGDLPLGGEAGIGRGRLKGVSAEIETPQHKGKPLTISLADGKRLIPSDRDALEH YVAALHAEVKR >Mature_490_residues STHPLATSRQISERWIIEGDLVLQTPTHLGNGDTDGIVDMPLLLDEVTGKALLPGTSLAGALRNYLYERCHGFEKQASDP WIEALFGGQKGNDDGDQSALIIDDALGEASKIELRDGVRIDPITRTAKVDFDNGVPRGYKYDLQLLEAGTTFPIRMELLL SQGNNQQQVKQMLVLALQGLEAGEIAIGLRKRRGFGVCRVTQWRVTRYDLTKPAGLLAWLAEDHPDWKYATGSERRSGQS IAGLLNVTLADSSDKRSFCRIRAQFVVDGSILIRAGFDEQDRGPDTVHLHSARPGGTRKPVLSGTSLAGALRHRAGRILR TIADDKQAQTMIDSIFGPAEITGDKKQKARSSRLVVNETVIENPVNLVQNRIRIDRFTGSVHGTGLFNEQPVFGKNDTLV TVDLTLRNPENAEIGLLLLLLKDLWTGDLPLGGEAGIGRGRLKGVSAEIETPQHKGKPLTISLADGKRLIPSDRDALEHY VAALHAEVKR
Specific function: Unknown
COG id: COG1336
COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53738; Mature: 53607
Theoretical pI: Translated: 7.38; Mature: 7.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTHPLATSRQISERWIIEGDLVLQTPTHLGNGDTDGIVDMPLLLDEVTGKALLPGTSLA CCCCCCCCCHHHCCEEEEECCEEEECCCCCCCCCCCCEEEHHHHHHHHCCCEECCCCHHH GALRNYLYERCHGFEKQASDPWIEALFGGQKGNDDGDQSALIIDDALGEASKIELRDGVR HHHHHHHHHHHCCCHHCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEEECCCCE IDPITRTAKVDFDNGVPRGYKYDLQLLEAGTTFPIRMELLLSQGNNQQQVKQMLVLALQG ECCCCCEEEEECCCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHCC LEAGEIAIGLRKRRGFGVCRVTQWRVTRYDLTKPAGLLAWLAEDHPDWKYATGSERRSGQ CCCCCEEEEEECCCCCCEEEEEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCC SIAGLLNVTLADSSDKRSFCRIRAQFVVDGSILIRAGFDEQDRGPDTVHLHSARPGGTRK CEEEEEEEEEECCCCCCHHHEEEEEEEECCEEEEEECCCCCCCCCCEEEEECCCCCCCCC PVLSGTSLAGALRHRAGRILRTIADDKQAQTMIDSIFGPAEITGDKKQKARSSRLVVNET CCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHCCCCHHHHHHHCCEEEEHH VIENPVNLVQNRIRIDRFTGSVHGTGLFNEQPVFGKNDTLVTVDLTLRNPENAEIGLLLL HHHCHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHH LLKDLWTGDLPLGGEAGIGRGRLKGVSAEIETPQHKGKPLTISLADGKRLIPSDRDALEH HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHH YVAALHAEVKR HHHHHHHHHCC >Mature Secondary Structure STHPLATSRQISERWIIEGDLVLQTPTHLGNGDTDGIVDMPLLLDEVTGKALLPGTSLA CCCCCCCCHHHCCEEEEECCEEEECCCCCCCCCCCCEEEHHHHHHHHCCCEECCCCHHH GALRNYLYERCHGFEKQASDPWIEALFGGQKGNDDGDQSALIIDDALGEASKIELRDGVR HHHHHHHHHHHCCCHHCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEEECCCCE IDPITRTAKVDFDNGVPRGYKYDLQLLEAGTTFPIRMELLLSQGNNQQQVKQMLVLALQG ECCCCCEEEEECCCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHCC LEAGEIAIGLRKRRGFGVCRVTQWRVTRYDLTKPAGLLAWLAEDHPDWKYATGSERRSGQ CCCCCEEEEEECCCCCCEEEEEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCC SIAGLLNVTLADSSDKRSFCRIRAQFVVDGSILIRAGFDEQDRGPDTVHLHSARPGGTRK CEEEEEEEEEECCCCCCHHHEEEEEEEECCEEEEEECCCCCCCCCCEEEEECCCCCCCCC PVLSGTSLAGALRHRAGRILRTIADDKQAQTMIDSIFGPAEITGDKKQKARSSRLVVNET CCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHCCCCHHHHHHHCCEEEEHH VIENPVNLVQNRIRIDRFTGSVHGTGLFNEQPVFGKNDTLVTVDLTLRNPENAEIGLLLL HHHCHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHH LLKDLWTGDLPLGGEAGIGRGRLKGVSAEIETPQHKGKPLTISLADGKRLIPSDRDALEH HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHH YVAALHAEVKR HHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA