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The map label for this gene is pdxS

Identifier: 222525652

GI number: 222525652

Start: 3030121

End: 3031002

Strand: Direct

Name: pdxS

Synonym: Chy400_2403

Alternate gene names: 222525652

Gene position: 3030121-3031002 (Clockwise)

Preceding gene: 222525651

Following gene: 222525653

Centisome position: 57.51

GC content: 55.78

Gene sequence:

>882_bases
ATGGAAAAATCGACATGGACGACGAAAGTTGGGCTGGCGCAGATGCTGAAAGGTGGCGTCATCATGGATGTTGTCACCCC
AGAGCAGGCGCGAATTGCTGAAGAGGCCGGGGCAGTGGCAGTGATGGCGCTGGAACGGGTACCGGCTGACATTCGCGCTC
AGGGTGGCGTGGCCCGTATGAGCGATCCAGAGCTGATCCTGGCGATCAAGCAGGCGGTAACCATTCCGGTGATGGCAAAA
GCACGGATTGGTCACTTCGTTGAAGCGCAGGTATTGGAAGCGATTGGCGTTGATTATATTGACGAAAGCGAAGTATTGAC
TCCTGCCGACGAAGAGCATCACATTAATAAACATAAGTTCCGTGTGCCGTTTGTCTGCGGTTGTCGTAATCTTGGTGAAG
CGCTGCGCCGTGTCGCCGAGGGTGCGGCAATGCTGCGCACGAAAGGCGAAGCCGGTACCGGTAATGTGGTCGAGGCTGTG
CGACACGCCCGTGCGGTGTACAGCGAGATTCGGCGCTTGCAGTCGATGAATGAAGATGAATTGTTCACCTACGCCAAGCA
GATCCAGGCTCCCTATGAGCTGGTAAAGCAGGTGGCGACTGAAGGTAAATTGCCGGTCGTCAACTTTGCCGCAGGTGGTA
TTGCTACCCCGGCTGATGCTGCGCTCCTGATGCAGCTTGGCGTTGATGGAATCTTCGTTGGTTCGGGTATCTTCAAGAGT
GGCGATCCGGTCAAGCGGGCACGGGCCATTGTTGAGGCAACAACCCACTACAATGACCCGGAGATTATTGCCGAGGTGAG
CAAGGGCCTCGGTGAGGCAATGGTTGGTATCAACATTGATCAGATTCCAGCCGATCAGTTGATGGCTCGCCGCGGCTGGT
AA

Upstream 100 bases:

>100_bases
CTGCGTTCCGCCTTGCGATGCATTGCCCTCACCGGTACAGCGTGGTACAATATTATGACGAGATTTACCAGCGTCACCTG
ATATTTTAGAGCGAGGCAAT

Downstream 100 bases:

>100_bases
TGAGGGGGCGGACGGGGTCACCCCCGTCCGCATAGAATGAGGTATGACAGTTGGTGTGTTAGCCCTTCAGGGCGATTTTC
GTGAACATTGTGCCGTGCTA

Product: pyridoxal biosynthesis lyase PdxS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MEKSTWTTKVGLAQMLKGGVIMDVVTPEQARIAEEAGAVAVMALERVPADIRAQGGVARMSDPELILAIKQAVTIPVMAK
ARIGHFVEAQVLEAIGVDYIDESEVLTPADEEHHINKHKFRVPFVCGCRNLGEALRRVAEGAAMLRTKGEAGTGNVVEAV
RHARAVYSEIRRLQSMNEDELFTYAKQIQAPYELVKQVATEGKLPVVNFAAGGIATPADAALLMQLGVDGIFVGSGIFKS
GDPVKRARAIVEATTHYNDPEIIAEVSKGLGEAMVGINIDQIPADQLMARRGW

Sequences:

>Translated_293_residues
MEKSTWTTKVGLAQMLKGGVIMDVVTPEQARIAEEAGAVAVMALERVPADIRAQGGVARMSDPELILAIKQAVTIPVMAK
ARIGHFVEAQVLEAIGVDYIDESEVLTPADEEHHINKHKFRVPFVCGCRNLGEALRRVAEGAAMLRTKGEAGTGNVVEAV
RHARAVYSEIRRLQSMNEDELFTYAKQIQAPYELVKQVATEGKLPVVNFAAGGIATPADAALLMQLGVDGIFVGSGIFKS
GDPVKRARAIVEATTHYNDPEIIAEVSKGLGEAMVGINIDQIPADQLMARRGW
>Mature_293_residues
MEKSTWTTKVGLAQMLKGGVIMDVVTPEQARIAEEAGAVAVMALERVPADIRAQGGVARMSDPELILAIKQAVTIPVMAK
ARIGHFVEAQVLEAIGVDYIDESEVLTPADEEHHINKHKFRVPFVCGCRNLGEALRRVAEGAAMLRTKGEAGTGNVVEAV
RHARAVYSEIRRLQSMNEDELFTYAKQIQAPYELVKQVATEGKLPVVNFAAGGIATPADAALLMQLGVDGIFVGSGIFKS
GDPVKRARAIVEATTHYNDPEIIAEVSKGLGEAMVGINIDQIPADQLMARRGW

Specific function: Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring

COG id: COG0214

COG function: function code H; Pyridoxine biosynthesis enzyme

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pdxS/SNZ family

Homologues:

Organism=Saccharomyces cerevisiae, GI6323743, Length=283, Percent_Identity=65.017667844523, Blast_Score=379, Evalue=1e-106,
Organism=Saccharomyces cerevisiae, GI6321049, Length=281, Percent_Identity=65.8362989323843, Blast_Score=372, Evalue=1e-104,
Organism=Saccharomyces cerevisiae, GI6323996, Length=281, Percent_Identity=65.4804270462633, Blast_Score=372, Evalue=1e-104,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PDXS_CHLAA (A9WFT9)

Other databases:

- EMBL:   CP000909
- RefSeq:   YP_001635828.1
- ProteinModelPortal:   A9WFT9
- SMR:   A9WFT9
- GeneID:   5826692
- GenomeReviews:   CP000909_GR
- KEGG:   cau:Caur_2230
- HOGENOM:   HBG292342
- OMA:   ARMSDPD
- ProtClustDB:   PRK04180
- HAMAP:   MF_01824
- InterPro:   IPR013785
- InterPro:   IPR011060
- InterPro:   IPR001852
- Gene3D:   G3DSA:3.20.20.70
- PIRSF:   PIRSF029271
- TIGRFAMs:   TIGR00343

Pfam domain/function: PF01680 SOR_SNZ; SSF51366 RibP_bind_barrel

EC number: NA

Molecular weight: Translated: 31549; Mature: 31549

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: PS01235 PDXS_SNZ_1; PS51129 PDXS_SNZ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKSTWTTKVGLAQMLKGGVIMDVVTPEQARIAEEAGAVAVMALERVPADIRAQGGVARM
CCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCEEEHHHHHCCHHHHCCCCCCCC
SDPELILAIKQAVTIPVMAKARIGHFVEAQVLEAIGVDYIDESEVLTPADEEHHINKHKF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCEE
RVPFVCGCRNLGEALRRVAEGAAMLRTKGEAGTGNVVEAVRHARAVYSEIRRLQSMNEDE
ECCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHH
LFTYAKQIQAPYELVKQVATEGKLPVVNFAAGGIATPADAALLMQLGVDGIFVGSGIFKS
HHHHHHHHCCHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHCCCEEEECCCCCCC
GDPVKRARAIVEATTHYNDPEIIAEVSKGLGEAMVGINIDQIPADQLMARRGW
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCC
>Mature Secondary Structure
MEKSTWTTKVGLAQMLKGGVIMDVVTPEQARIAEEAGAVAVMALERVPADIRAQGGVARM
CCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCEEEHHHHHCCHHHHCCCCCCCC
SDPELILAIKQAVTIPVMAKARIGHFVEAQVLEAIGVDYIDESEVLTPADEEHHINKHKF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCEE
RVPFVCGCRNLGEALRRVAEGAAMLRTKGEAGTGNVVEAVRHARAVYSEIRRLQSMNEDE
ECCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHH
LFTYAKQIQAPYELVKQVATEGKLPVVNFAAGGIATPADAALLMQLGVDGIFVGSGIFKS
HHHHHHHHCCHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHCCCEEEECCCCCCC
GDPVKRARAIVEATTHYNDPEIIAEVSKGLGEAMVGINIDQIPADQLMARRGW
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA