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The map label for this gene is ydhD [H]

Identifier: 222525098

GI number: 222525098

Start: 2325385

End: 2326632

Strand: Reverse

Name: ydhD [H]

Synonym: Chy400_1836

Alternate gene names: 222525098

Gene position: 2326632-2325385 (Counterclockwise)

Preceding gene: 222525099

Following gene: 222525097

Centisome position: 44.16

GC content: 55.61

Gene sequence:

>1248_bases
GTGCGAGCTGGCACGATCATTACTGGAACTATCTACATCAGTGCATTGGTCATTGCCGGTGTGCTCCTCTGGCAGACCCT
GCAAATGTCGAGTACGTTGATCACGTTCTCGGCTACCGCTCCTTCACCGACGATTGCCCCAGAACCAACCGCGACCGCAG
CCCCCTTGCTGGTTTTGCCAACGCCGATTCCTCCCACACCGGTACCAACTGCGGCTCCTCCCGAACCGGATATGGCCGGC
TACCACCCAAAGAGCGGGCGTTATATCGCTGTCTGGTTACCGCCCAATTTTACCGGTGATGCCCGCGAGTCGTTCTTTGC
GAATGTTGACATTATCGACGACATCAGCCCATTCTGGTACACCACCGATGCCAGTGGCCGTCTTTATGGACAACGCGATG
ACGAATTGGTGCGGATAGCGCACGAGAACAATGTGCGGATTATCCCCTCCATTCACAATGTTAATAATCCTGGTGCGGTG
GTTCCGGTGCTGACCAATCCCCAACTGCGGGCGCGGCATATCCAGAATATTGTGGATGAGGTATTGGCCCGTGGGTACGA
TGGCATTGACATCGATTATGAGTCACTGGCACCATCACTACGCGATGACTATACCGCGTTTATCGTTGATCTGGCCGCAG
CACTGCATGCCCACAACAAGCTGCTGACGGTAGCCGTCCACGCCAAGGATCGGGATGACGGTGGTTTAGGGGCATTTCAA
GATTGGGCAGCCATTGGGCCACACGTCGATCAGTTGCGGATTATGACCTACGACTATCATTGGCGCGGTTCCGGCCCTGG
CCCGGTAGCACCGGCCTACTGGATCGAAGCGGTCGCCAGTTATGCCCGTGAGGTTGTTGATCCGGCGAAAGTATTGATCG
GCGTTCACTTCTACGGCTACGATTGGCCGCCGAACGGCAATGCCACTGCTCGTCCGTGGCGCGTGATTGAAGAGATTATC
AACGAGTACCAGCCAACGGTCAGTTTTATCGAACGTAATGCCCGTGGTCGGGTGGGAGAGAGCACCTTTACCTATCGCAC
CAGTGCCGGTACCCGCACCGTCTGGTTTATGACCGATACCGGTCTGGCCGATAAGATTGCAACTGTACAGAAGCTCGATT
TGGCCGGGATTGCCATCTGGCAATTGGGCTATGAACGGCCCGAATACTGGCAGACGGTACGAGCCAATCTTGTGCAAGAC
TCGACCCTGATCCAGCGAGCGCTCAACGAATTACTCCCTGATCATTGA

Upstream 100 bases:

>100_bases
TGTTGCATGAAATAGCTCATCACTTCGGCATCAGCGATGAACGTTTACGAGAGCTGGGTGCTTACTAGTCCAGGCATGAT
AGCAGGAGAGTGAGGCGAGC

Downstream 100 bases:

>100_bases
GCGTATGCATTGCATAAGTGTTCTGATCAGACTATACTTGTGTGATTGAGACCAATTTCTGCGTTTACCTGGTGTAGATG
TGCAATCTCGTTGCCCACGA

Product: glycoside hydrolase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 415; Mature: 415

Protein sequence:

>415_residues
MRAGTIITGTIYISALVIAGVLLWQTLQMSSTLITFSATAPSPTIAPEPTATAAPLLVLPTPIPPTPVPTAAPPEPDMAG
YHPKSGRYIAVWLPPNFTGDARESFFANVDIIDDISPFWYTTDASGRLYGQRDDELVRIAHENNVRIIPSIHNVNNPGAV
VPVLTNPQLRARHIQNIVDEVLARGYDGIDIDYESLAPSLRDDYTAFIVDLAAALHAHNKLLTVAVHAKDRDDGGLGAFQ
DWAAIGPHVDQLRIMTYDYHWRGSGPGPVAPAYWIEAVASYAREVVDPAKVLIGVHFYGYDWPPNGNATARPWRVIEEII
NEYQPTVSFIERNARGRVGESTFTYRTSAGTRTVWFMTDTGLADKIATVQKLDLAGIAIWQLGYERPEYWQTVRANLVQD
STLIQRALNELLPDH

Sequences:

>Translated_415_residues
MRAGTIITGTIYISALVIAGVLLWQTLQMSSTLITFSATAPSPTIAPEPTATAAPLLVLPTPIPPTPVPTAAPPEPDMAG
YHPKSGRYIAVWLPPNFTGDARESFFANVDIIDDISPFWYTTDASGRLYGQRDDELVRIAHENNVRIIPSIHNVNNPGAV
VPVLTNPQLRARHIQNIVDEVLARGYDGIDIDYESLAPSLRDDYTAFIVDLAAALHAHNKLLTVAVHAKDRDDGGLGAFQ
DWAAIGPHVDQLRIMTYDYHWRGSGPGPVAPAYWIEAVASYAREVVDPAKVLIGVHFYGYDWPPNGNATARPWRVIEEII
NEYQPTVSFIERNARGRVGESTFTYRTSAGTRTVWFMTDTGLADKIATVQKLDLAGIAIWQLGYERPEYWQTVRANLVQD
STLIQRALNELLPDH
>Mature_415_residues
MRAGTIITGTIYISALVIAGVLLWQTLQMSSTLITFSATAPSPTIAPEPTATAAPLLVLPTPIPPTPVPTAAPPEPDMAG
YHPKSGRYIAVWLPPNFTGDARESFFANVDIIDDISPFWYTTDASGRLYGQRDDELVRIAHENNVRIIPSIHNVNNPGAV
VPVLTNPQLRARHIQNIVDEVLARGYDGIDIDYESLAPSLRDDYTAFIVDLAAALHAHNKLLTVAVHAKDRDDGGLGAFQ
DWAAIGPHVDQLRIMTYDYHWRGSGPGPVAPAYWIEAVASYAREVVDPAKVLIGVHFYGYDWPPNGNATARPWRVIEEII
NEYQPTVSFIERNARGRVGESTFTYRTSAGTRTVWFMTDTGLADKIATVQKLDLAGIAIWQLGYERPEYWQTVRANLVQD
STLIQRALNELLPDH

Specific function: Unknown

COG id: COG3858

COG function: function code R; Predicted glycosyl hydrolase

Gene ontology:

Cell location: Spore wall (Probable). Note=Probably localized either on the surface of the outer spore membrane and/or in the inner spore coat [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 LysM repeats [H]

Homologues:

Organism=Caenorhabditis elegans, GI17536195, Length=304, Percent_Identity=24.6710526315789, Blast_Score=65, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011583
- InterPro:   IPR001223
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF00704 Glyco_hydro_18; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 45784; Mature: 45784

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: PS01095 CHITINASE_18

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAGTIITGTIYISALVIAGVLLWQTLQMSSTLITFSATAPSPTIAPEPTATAAPLLVLP
CCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEC
TPIPPTPVPTAAPPEPDMAGYHPKSGRYIAVWLPPNFTGDARESFFANVDIIDDISPFWY
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHEECCEEECCCCCCEE
TTDASGRLYGQRDDELVRIAHENNVRIIPSIHNVNNPGAVVPVLTNPQLRARHIQNIVDE
EECCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCEEEEECCCHHHHHHHHHHHHH
VLARGYDGIDIDYESLAPSLRDDYTAFIVDLAAALHAHNKLLTVAVHAKDRDDGGLGAFQ
HHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHH
DWAAIGPHVDQLRIMTYDYHWRGSGPGPVAPAYWIEAVASYAREVVDPAKVLIGVHFYGY
HHHHCCCCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCHHHEEEEEEEECC
DWPPNGNATARPWRVIEEIINEYQPTVSFIERNARGRVGESTFTYRTSAGTRTVWFMTDT
CCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEEECC
GLADKIATVQKLDLAGIAIWQLGYERPEYWQTVRANLVQDSTLIQRALNELLPDH
CCHHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRAGTIITGTIYISALVIAGVLLWQTLQMSSTLITFSATAPSPTIAPEPTATAAPLLVLP
CCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEC
TPIPPTPVPTAAPPEPDMAGYHPKSGRYIAVWLPPNFTGDARESFFANVDIIDDISPFWY
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHEECCEEECCCCCCEE
TTDASGRLYGQRDDELVRIAHENNVRIIPSIHNVNNPGAVVPVLTNPQLRARHIQNIVDE
EECCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCEEEEECCCHHHHHHHHHHHHH
VLARGYDGIDIDYESLAPSLRDDYTAFIVDLAAALHAHNKLLTVAVHAKDRDDGGLGAFQ
HHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHH
DWAAIGPHVDQLRIMTYDYHWRGSGPGPVAPAYWIEAVASYAREVVDPAKVLIGVHFYGY
HHHHCCCCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCHHHEEEEEEEECC
DWPPNGNATARPWRVIEEIINEYQPTVSFIERNARGRVGESTFTYRTSAGTRTVWFMTDT
CCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEEECC
GLADKIATVQKLDLAGIAIWQLGYERPEYWQTVRANLVQDSTLIQRALNELLPDH
CCHHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377; 12177332 [H]