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The map label for this gene is yjcF [C]

Identifier: 222525090

GI number: 222525090

Start: 2310008

End: 2310949

Strand: Direct

Name: yjcF [C]

Synonym: Chy400_1827

Alternate gene names: 222525090

Gene position: 2310008-2310949 (Clockwise)

Preceding gene: 222525089

Following gene: 222525100

Centisome position: 43.84

GC content: 57.22

Gene sequence:

>942_bases
ATGGCCGACCTGACTCCTGAACAGATTTTTGACCTCCTCAACCGACCTGGCCCGTTGTGGCTGGTGGGGGCGAATTTGAG
TGGTGCGAACCTGAGTGCTGCTAATCTGAGCAATGCCAACTTAAGCGAAGCCCAATTGAGCCGTACCCGCCTCACCGATG
CCAACCTGTACCGGGCCGATCTGAGTGTGTGTGAGTTGGGTGGTGCCAATCTGAGCTGGGCCAATCTGCGTGAAGCGCGA
TTGAATTGGGCACAACTGGTGCGTGCCGATTTGAGTGATGCTGATTTGCGTAAGGCCGATCTGAGCTGGGCTAACCTGGA
ATTTGCGTCGCTGGTTGGCGCCAATCTGCGCGGCGCTAATTTAAGTGCTGCCGACTTCAGTGGGGCCAATCTGTACGGGG
CAAACCTCAGCCTGTGCAATCTCAGTGGTGCCGATCTGCGCGATACGGTGATGATCGGGGCAAATCTGAGCGAAGCACAA
CTGCGCGAGGCGCAACTGGTGAATTTGAGTGGCGCAAATCTGAGTGGTGCTATCCTGATTCGGGTGAGCCTCAATGGCGT
CAACGGCAACGGGGCCAATCTGGCGAATGCCAATTTGATGCACGCCAATCTGCGTGAGGCGACCTTCGATGAGGCAAATT
TTATCGGTGCCAATCTCAGCGAAGCCAATTTAGGCGAAGCCAGTTTGTGTAATGCCGATTTCAGCGAGGCGAACCTTAGC
GGTATTTACCTCAGCGGCGCTAATCTCCGCGGGGCGATCTTCACGCGGGCCAATCTGTCTCGTGCGAACCTGAGTGGGGC
CAACCTGCGTGGTGCGAACCTGCGTGGCGCGAACCTGCGTGAAGCGAGTCTGGCCGACGCCGATTTGACCGAGGCCGATC
TGACTGATGCCGATCTGACCGATTGTGATCTGACCGGTGCGAAGGGGGTGGCGGGATTGTAG

Upstream 100 bases:

>100_bases
AGAACAGATTGCCTGTCGTTCAATGGGGGCGCCGGCGTCGATCTGGCTGGTCTCGAAGACGCCGACGCTGCCGTACAACT
GATGTGTAAAGGAGGGCCGT

Downstream 100 bases:

>100_bases
TCAGAGAATCGTTGCAAGAGTTACCAATTTGCTATGCCATGGGCTATCAAACCTCGCGAGCCAATCATATGCCGGACATA
GAGTACGGATGACTGTGCTC

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 312

Protein sequence:

>313_residues
MADLTPEQIFDLLNRPGPLWLVGANLSGANLSAANLSNANLSEAQLSRTRLTDANLYRADLSVCELGGANLSWANLREAR
LNWAQLVRADLSDADLRKADLSWANLEFASLVGANLRGANLSAADFSGANLYGANLSLCNLSGADLRDTVMIGANLSEAQ
LREAQLVNLSGANLSGAILIRVSLNGVNGNGANLANANLMHANLREATFDEANFIGANLSEANLGEASLCNADFSEANLS
GIYLSGANLRGAIFTRANLSRANLSGANLRGANLRGANLREASLADADLTEADLTDADLTDCDLTGAKGVAGL

Sequences:

>Translated_313_residues
MADLTPEQIFDLLNRPGPLWLVGANLSGANLSAANLSNANLSEAQLSRTRLTDANLYRADLSVCELGGANLSWANLREAR
LNWAQLVRADLSDADLRKADLSWANLEFASLVGANLRGANLSAADFSGANLYGANLSLCNLSGADLRDTVMIGANLSEAQ
LREAQLVNLSGANLSGAILIRVSLNGVNGNGANLANANLMHANLREATFDEANFIGANLSEANLGEASLCNADFSEANLS
GIYLSGANLRGAIFTRANLSRANLSGANLRGANLRGANLREASLADADLTEADLTDADLTDCDLTGAKGVAGL
>Mature_312_residues
ADLTPEQIFDLLNRPGPLWLVGANLSGANLSAANLSNANLSEAQLSRTRLTDANLYRADLSVCELGGANLSWANLREARL
NWAQLVRADLSDADLRKADLSWANLEFASLVGANLRGANLSAADFSGANLYGANLSLCNLSGADLRDTVMIGANLSEAQL
REAQLVNLSGANLSGAILIRVSLNGVNGNGANLANANLMHANLREATFDEANFIGANLSEANLGEASLCNADFSEANLSG
IYLSGANLRGAIFTRANLSRANLSGANLRGANLRGANLREASLADADLTEADLTDADLTDCDLTGAKGVAGL

Specific function: Unknown

COG id: COG1357

COG function: function code S; Uncharacterized low-complexity proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 7 pentapeptide repeat domains [H]

Homologues:

Organism=Homo sapiens, GI39753959, Length=171, Percent_Identity=35.672514619883, Blast_Score=75, Evalue=7e-14,
Organism=Drosophila melanogaster, GI221377802, Length=211, Percent_Identity=34.5971563981043, Blast_Score=87, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 32573; Mature: 32441

Theoretical pI: Translated: 4.26; Mature: 4.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADLTPEQIFDLLNRPGPLWLVGANLSGANLSAANLSNANLSEAQLSRTRLTDANLYRAD
CCCCCHHHHHHHHCCCCCEEEEECCCCCCCCEECCCCCCCCCHHHHHHHHCCCCCEEHHC
LSVCELGGANLSWANLREARLNWAQLVRADLSDADLRKADLSWANLEFASLVGANLRGAN
CCEEECCCCCCCHHHHHHHHCCHHHHHHHCCCCCHHHHHCCCCCCEEHHHHHCCCCCCCC
LSAADFSGANLYGANLSLCNLSGADLRDTVMIGANLSEAQLREAQLVNLSGANLSGAILI
CCCCCCCCCEEEECCEEEEECCCCCCCEEEEECCCCCHHHHHHEEEEEECCCCCCCEEEE
RVSLNGVNGNGANLANANLMHANLREATFDEANFIGANLSEANLGEASLCNADFSEANLS
EEEEECCCCCCCCCCCCEEEECCCHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC
GIYLSGANLRGAIFTRANLSRANLSGANLRGANLRGANLREASLADADLTEADLTDADLT
EEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DCDLTGAKGVAGL
CCCCCCCCCCCCC
>Mature Secondary Structure 
ADLTPEQIFDLLNRPGPLWLVGANLSGANLSAANLSNANLSEAQLSRTRLTDANLYRAD
CCCCHHHHHHHHCCCCCEEEEECCCCCCCCEECCCCCCCCCHHHHHHHHCCCCCEEHHC
LSVCELGGANLSWANLREARLNWAQLVRADLSDADLRKADLSWANLEFASLVGANLRGAN
CCEEECCCCCCCHHHHHHHHCCHHHHHHHCCCCCHHHHHCCCCCCEEHHHHHCCCCCCCC
LSAADFSGANLYGANLSLCNLSGADLRDTVMIGANLSEAQLREAQLVNLSGANLSGAILI
CCCCCCCCCEEEECCEEEEECCCCCCCEEEEECCCCCHHHHHHEEEEEECCCCCCCEEEE
RVSLNGVNGNGANLANANLMHANLREATFDEANFIGANLSEANLGEASLCNADFSEANLS
EEEEECCCCCCCCCCCCEEEECCCHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC
GIYLSGANLRGAIFTRANLSRANLSGANLRGANLRGANLREASLADADLTEADLTDADLT
EEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DCDLTGAKGVAGL
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]