Click here to switch to the map view.

The map label for this gene is cph2 [H]

Identifier: 222525055

GI number: 222525055

Start: 2267969

End: 2268874

Strand: Direct

Name: cph2 [H]

Synonym: Chy400_1792

Alternate gene names: 222525055

Gene position: 2267969-2268874 (Clockwise)

Preceding gene: 222525053

Following gene: 222525056

Centisome position: 43.04

GC content: 56.62

Gene sequence:

>906_bases
TTGCGTTGGGAGCCGCTGCAGGAGCAGATTGTGCTGGCGTTTGCCTGTACGGCGGCGACGACCATGGACGATATTGAGAC
AGGGAGGGTGTACTCGCTGCGCGATGTACCGGTCTTGCAACAGGTATTGATCAGTGCTGAGCCGGCTTTCATCAATGCCG
ACCAGGATGTTGATAATACGTTTCTCGGCCAGTTAGATTGCCCAAAGCTGTTGATCTTGCCGCTGGCGACCGGTCTGAAA
ACATCGGTGTATGGTCTCGTTGTGGTTGGGCGGGCACGCAGTGATCCCGATTTTACCACTGCCGAACTCCAACTGGGCCA
GAGTCTGGCGACACAGGCGGCGACTGCGCTGGAAAATGCACGGTTGTACGCCGAAGTAGAAGCACTGGCAGTTACCGATA
GTCTGACCGGGATTGCCAATCGGCGTGCTTTTGATCGGGCGCTTGAACGTGAGTTTGTGCGGGCGCGTCACTACGGTTAT
CCACTGGCGCTGATTATGGTCGATATCGATTCATTCAAACACTACAACGATACGTATGGTCATCTGGCCGGTGATGACAG
ATTGCGGGCAGTGGCACAGTTGCTGGCGCAATCGGTACGTGAAGTAGACTTTGTCGCCCGCTACGGTGGTGAGGAGTTTG
CGATTATCCTGACCAATACCGACAAGCAGACGGCGATAGCTGTGGCCGAGCAGATACGACGTAAGGCTGAAATGTCGTGT
CCTGAACCACTGAATGGGCTACCGGTGTCCGGCTACACCCTCAGTCTCGGTGTGGCAGCTTTCCCGGATGATGCTCAGAC
ACCCGTGGCGCTGTTGCTGGCTGCCGACAATGCCGAGCTGGCGGCCAAGCGGGCTGGGAAGAACCGGGTGTGGGTGGTGG
GGTATGAGATGGAGGAAGAAGGGTAA

Upstream 100 bases:

>100_bases
CATTTCAGGCGGCGCGCTGTGTCATCTTGCGTCGGGAGCCAAGCGAACCTCCTTTCATGCTTAACCAAACGCCGAATTTC
AGGCGGCGCGCTGTGTCATC

Downstream 100 bases:

>100_bases
GATTAGTTGCTGGTATGAGGAGAATCATACTATCAAATCTTGAAAATACGTGCATTACTGCCTATCCCGGATATGCGGTG
AACCATGACAATCAGTGGGG

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MRWEPLQEQIVLAFACTAATTMDDIETGRVYSLRDVPVLQQVLISAEPAFINADQDVDNTFLGQLDCPKLLILPLATGLK
TSVYGLVVVGRARSDPDFTTAELQLGQSLATQAATALENARLYAEVEALAVTDSLTGIANRRAFDRALEREFVRARHYGY
PLALIMVDIDSFKHYNDTYGHLAGDDRLRAVAQLLAQSVREVDFVARYGGEEFAIILTNTDKQTAIAVAEQIRRKAEMSC
PEPLNGLPVSGYTLSLGVAAFPDDAQTPVALLLAADNAELAAKRAGKNRVWVVGYEMEEEG

Sequences:

>Translated_301_residues
MRWEPLQEQIVLAFACTAATTMDDIETGRVYSLRDVPVLQQVLISAEPAFINADQDVDNTFLGQLDCPKLLILPLATGLK
TSVYGLVVVGRARSDPDFTTAELQLGQSLATQAATALENARLYAEVEALAVTDSLTGIANRRAFDRALEREFVRARHYGY
PLALIMVDIDSFKHYNDTYGHLAGDDRLRAVAQLLAQSVREVDFVARYGGEEFAIILTNTDKQTAIAVAEQIRRKAEMSC
PEPLNGLPVSGYTLSLGVAAFPDDAQTPVALLLAADNAELAAKRAGKNRVWVVGYEMEEEG
>Mature_301_residues
MRWEPLQEQIVLAFACTAATTMDDIETGRVYSLRDVPVLQQVLISAEPAFINADQDVDNTFLGQLDCPKLLILPLATGLK
TSVYGLVVVGRARSDPDFTTAELQLGQSLATQAATALENARLYAEVEALAVTDSLTGIANRRAFDRALEREFVRARHYGY
PLALIMVDIDSFKHYNDTYGHLAGDDRLRAVAQLLAQSVREVDFVARYGGEEFAIILTNTDKQTAIAVAEQIRRKAEMSC
PEPLNGLPVSGYTLSLGVAAFPDDAQTPVALLLAADNAELAAKRAGKNRVWVVGYEMEEEG

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=173, Percent_Identity=39.8843930635838, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1787262, Length=165, Percent_Identity=36.3636363636364, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI87081881, Length=174, Percent_Identity=37.9310344827586, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1786584, Length=187, Percent_Identity=33.6898395721925, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI87081974, Length=134, Percent_Identity=32.8358208955224, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787541, Length=183, Percent_Identity=30.6010928961749, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787816, Length=167, Percent_Identity=34.1317365269461, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788085, Length=170, Percent_Identity=31.1764705882353, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788381, Length=192, Percent_Identity=30.2083333333333, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI87082007, Length=175, Percent_Identity=36, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1787802, Length=223, Percent_Identity=27.3542600896861, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081977, Length=108, Percent_Identity=34.2592592592593, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1787056, Length=120, Percent_Identity=34.1666666666667, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 32879; Mature: 32879

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRWEPLQEQIVLAFACTAATTMDDIETGRVYSLRDVPVLQQVLISAEPAFINADQDVDNT
CCCCCHHHHEEHHHHHHHHCCHHCCCCCCEEEECCCHHHHHHHHCCCCCEEECCCCCCCH
FLGQLDCPKLLILPLATGLKTSVYGLVVVGRARSDPDFTTAELQLGQSLATQAATALENA
HCCCCCCCCEEEEECCCCCHHHEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
RLYAEVEALAVTDSLTGIANRRAFDRALEREFVRARHYGYPLALIMVDIDSFKHYNDTYG
HHEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHCCCCCCCC
HLAGDDRLRAVAQLLAQSVREVDFVARYGGEEFAIILTNTDKQTAIAVAEQIRRKAEMSC
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCC
PEPLNGLPVSGYTLSLGVAAFPDDAQTPVALLLAADNAELAAKRAGKNRVWVVGYEMEEE
CCCCCCCCCCCEEEEEEEEECCCCCCCCEEEEEEECCHHHHHHHCCCCCEEEEEEEECCC
G
C
>Mature Secondary Structure
MRWEPLQEQIVLAFACTAATTMDDIETGRVYSLRDVPVLQQVLISAEPAFINADQDVDNT
CCCCCHHHHEEHHHHHHHHCCHHCCCCCCEEEECCCHHHHHHHHCCCCCEEECCCCCCCH
FLGQLDCPKLLILPLATGLKTSVYGLVVVGRARSDPDFTTAELQLGQSLATQAATALENA
HCCCCCCCCEEEEECCCCCHHHEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
RLYAEVEALAVTDSLTGIANRRAFDRALEREFVRARHYGYPLALIMVDIDSFKHYNDTYG
HHEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHCCCCCCCC
HLAGDDRLRAVAQLLAQSVREVDFVARYGGEEFAIILTNTDKQTAIAVAEQIRRKAEMSC
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCC
PEPLNGLPVSGYTLSLGVAAFPDDAQTPVALLLAADNAELAAKRAGKNRVWVVGYEMEEE
CCCCCCCCCCCEEEEEEEEECCCCCCCCEEEEEEECCHHHHHHHCCCCCEEEEEEEECCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]