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The map label for this gene is 222524891

Identifier: 222524891

GI number: 222524891

Start: 2053071

End: 2053643

Strand: Direct

Name: 222524891

Synonym: Chy400_1623

Alternate gene names: NA

Gene position: 2053071-2053643 (Clockwise)

Preceding gene: 222524890

Following gene: 222524894

Centisome position: 38.97

GC content: 61.78

Gene sequence:

>573_bases
ATGACCCACCCAACCCACCACGACCTCATCGTCGGGCTGCGTGCCCGGGATCCGCACGTCATCGAGTGGCTATACACCAC
CTACGCTCGTCGGCTCTATGCGTCCATCTTGCGGCGCCTGGGTGATCCTGATCTGGCCTTCGACTTGCACCACGAGGTCT
TTGCCCGCCTGATCGAACGTGCTCCCACCTTTGAAGATCGCGGGGTACCGGTCGGGGCCTGGCTCTTCCGCGTGGCGCGC
GACCTGGTCGTCGACGTCCTGCGTCATCCCCAACGCACGGTATCTCTCACCGGCACGACGGTGACCGATACGTCATCTGA
CCTGGACAGTCTCTTCATTGCTGAAAGCGAGCGGCAAACCCTGTATGTGGCGTTGCAGCGACTGCCAGACCAGTACCGGC
AAGTCCTCCTCTTGCACGATCAGTATCAGCTCGCCCTGCCCGACATAGCCCATCAACTGGGACGCAGCCAGGAGGCAACG
AAGACCCTCCTCTATCGGGCTGTCCTGGCGCTACGTAAACAGATGCAGGTGCTGAGCACCGACTCTAGCACGCTGACACC
ACCGATGGCGTGA

Upstream 100 bases:

>100_bases
AAACTAAAATGATACAAATTTTTTACCAAAAACTCTCCACGCTTCCCCTATACTTTGTCGTATCCGCATTCATCGTTGCT
TAGCACTCACGAAGGTTTGT

Downstream 100 bases:

>100_bases
GGGCGAGTCTGTGCACGACCGCCCCCTACCTGGGAGCACATATGGGAAACAGGGCTTAAGGGCATCCTGCGTGCGCTCAC
CTCTAGCCTTCTTTTATAGC

Product: ECF subfamily RNA polymerase sigma-24 subunit

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Subunit; Sigma-70 Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 190; Mature: 189

Protein sequence:

>190_residues
MTHPTHHDLIVGLRARDPHVIEWLYTTYARRLYASILRRLGDPDLAFDLHHEVFARLIERAPTFEDRGVPVGAWLFRVAR
DLVVDVLRHPQRTVSLTGTTVTDTSSDLDSLFIAESERQTLYVALQRLPDQYRQVLLLHDQYQLALPDIAHQLGRSQEAT
KTLLYRAVLALRKQMQVLSTDSSTLTPPMA

Sequences:

>Translated_190_residues
MTHPTHHDLIVGLRARDPHVIEWLYTTYARRLYASILRRLGDPDLAFDLHHEVFARLIERAPTFEDRGVPVGAWLFRVAR
DLVVDVLRHPQRTVSLTGTTVTDTSSDLDSLFIAESERQTLYVALQRLPDQYRQVLLLHDQYQLALPDIAHQLGRSQEAT
KTLLYRAVLALRKQMQVLSTDSSTLTPPMA
>Mature_189_residues
THPTHHDLIVGLRARDPHVIEWLYTTYARRLYASILRRLGDPDLAFDLHHEVFARLIERAPTFEDRGVPVGAWLFRVARD
LVVDVLRHPQRTVSLTGTTVTDTSSDLDSLFIAESERQTLYVALQRLPDQYRQVLLLHDQYQLALPDIAHQLGRSQEATK
TLLYRAVLALRKQMQVLSTDSSTLTPPMA

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21761; Mature: 21630

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHPTHHDLIVGLRARDPHVIEWLYTTYARRLYASILRRLGDPDLAFDLHHEVFARLIER
CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
APTFEDRGVPVGAWLFRVARDLVVDVLRHPQRTVSLTGTTVTDTSSDLDSLFIAESERQT
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCEECCCCCHHHHHHHCCCCHHH
LYVALQRLPDQYRQVLLLHDQYQLALPDIAHQLGRSQEATKTLLYRAVLALRKQMQVLST
HHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC
DSSTLTPPMA
CCCCCCCCCC
>Mature Secondary Structure 
THPTHHDLIVGLRARDPHVIEWLYTTYARRLYASILRRLGDPDLAFDLHHEVFARLIER
CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
APTFEDRGVPVGAWLFRVARDLVVDVLRHPQRTVSLTGTTVTDTSSDLDSLFIAESERQT
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCEECCCCCHHHHHHHCCCCHHH
LYVALQRLPDQYRQVLLLHDQYQLALPDIAHQLGRSQEATKTLLYRAVLALRKQMQVLST
HHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC
DSSTLTPPMA
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA