| Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
|---|---|
| Accession | NC_012032 |
| Length | 5,268,950 |
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The map label for this gene is 222524872
Identifier: 222524872
GI number: 222524872
Start: 2031925
End: 2033529
Strand: Direct
Name: 222524872
Synonym: Chy400_1599
Alternate gene names: NA
Gene position: 2031925-2033529 (Clockwise)
Preceding gene: 222524861
Following gene: 222524873
Centisome position: 38.56
GC content: 54.58
Gene sequence:
>1605_bases ATGACATTCCTGTGTCGTTTCTATACGATGATTCTGGTGTTCATTTTGGCAGGGTGCAACGCTCCTGTTGCCACGCCTGG ATCAACCACGACGCCGGTTGCTGCACCGACGGCAGTCCTACCGACCACGGCAGCTCCTACGTTACCGGCTGCAACCTCCA TCAGTAACGTACCCACAATTGTGATCGATCCAACCACTGCGCAACCTTTTGATCGCCGGTTGCTGGGCACCAACGTCCCG GCGTGGTTGAGTCCTTACCGGCTGAACGACGAGACGTTTATTCAACGTACTGCCGATCTTGGACTGAGTCTGTTACGCAT GCCAGGAGGAAGCTGGAGTAATGGCTATGCCTGGGCAGCCTGTGAAACCGGTGGTGAAGAGTGTTACTGGCCGTGGGCGG CCAAACCATCCGATTTTCTGCGCTTTGCCCGTGCAGTGAATGCTGACATCATCTGGACAGTCTCGATCAATGGTTCAGCG CAAGAGGCAGCGGCACTGGTTGCCTTCTTCAATGGCACCGTTGATGACCAGCGACCGATAGGGGTTGACGCTCGTGGCCG CGACTGGCAGACCGTCGGTTATTGGGCCAGGTTGCGCGCCGAGACCGGTAGCACCGACCCTTTCCCGGTACGGTATTGGG AAGTCGGTAATGAGGTGTACGGGGCAAAGGGCGAGGTTGGTCCAAATTGCTCTGAATGGGGGTGGGAAGACGTCTGGACA TGCGATCCCGATGAATATCTGCGCGGCAAAACGGTCAATGGTATCGCTTATGATGGCTATCTGGCTTTCTACGACGCGAT GAAAGCGGTTGATCCAACCATTCAGATTGGTGCCGTTGGCGTTGAAAAGCCTGATGAGTGGAGCGATTGGGGGAATCGGG TGATTGCTGGTGCCGGTGATAAGCTCGATTTTTATGTGGTGCATTACTATCCATACTTTCAGCCCCCAGAGAATCCGCGT GGTGCCCTCCAACAACCGCAACGAAGCTGGTCAACTATTATGACCGAACTTAACAACGCCTTTGAGCGCCATCTGGGGCG ACGGGTGCCAGTAGCGGTCACTGAATACAATCTGATCGCCTTCCAGGACCTCGATAACGCTCAGTTGATGCGGCGGGGAG TTAATCTGCTCTTCATTGCCGATACGATTGGGCAGATGGCAACGCATGGCGTGGTGATAGCCAATCAGTGGGATTTAGCC AATGGACGTGCTGCCAACGACACCGATTACGGTCTTCTCCACGCCGATACCTTCGAGCCGCATCCTCAATATTACGCTCT GCTGATCTGGCGCGATTTCGGCGATGAGATGCTCTCTGTTCAGACAACATTTGATCCGGCGACAACGTTAAGTGTTTATG CCGGACGACACGCCGATGGAACACTGACACTACTGGCGATCAACAAAACCGACCAGCCACTTGTTGCGGCCATTGGCTTA CCCGAAGCTGAATGGCAGGTGAAAGCCACCACCGTGAGCGCCAGCGATCTGTTAGCCGAGACCGTATCTGTCAATCGTGA CGAAGCACCAACTGCCCATACTCCGGATCGTGTCTATACGTTTGCTCCATATGCGGTGACCTTCTTAACCTTTACCAGTC CATAA
Upstream 100 bases:
>100_bases ACCATTCGTTTGTCAGATTACTGTGGCACTGTATATATAGTCAGTGTATTATCGCTGTTACGCTCATTCCGGTTATCGTT GTAGTCAGATGGAGTTCTTC
Downstream 100 bases:
>100_bases TGCAGGAGGGAGGATCATATGCGACAACCGTTTATGGCGATCACAATCATCATATTATTGTGGGGTAATTCTATCGCTAC CCAACCGGCCAGCGCCGCAA
Product: alpha-L-arabinofuranosidase-like protein
Products: NA
Alternate protein names: Alpha-L-Arabinofuranosidase Domain Protein; Cellulase; Alpha-L-Arabinofuranosidase
Number of amino acids: Translated: 534; Mature: 533
Protein sequence:
>534_residues MTFLCRFYTMILVFILAGCNAPVATPGSTTTPVAAPTAVLPTTAAPTLPAATSISNVPTIVIDPTTAQPFDRRLLGTNVP AWLSPYRLNDETFIQRTADLGLSLLRMPGGSWSNGYAWAACETGGEECYWPWAAKPSDFLRFARAVNADIIWTVSINGSA QEAAALVAFFNGTVDDQRPIGVDARGRDWQTVGYWARLRAETGSTDPFPVRYWEVGNEVYGAKGEVGPNCSEWGWEDVWT CDPDEYLRGKTVNGIAYDGYLAFYDAMKAVDPTIQIGAVGVEKPDEWSDWGNRVIAGAGDKLDFYVVHYYPYFQPPENPR GALQQPQRSWSTIMTELNNAFERHLGRRVPVAVTEYNLIAFQDLDNAQLMRRGVNLLFIADTIGQMATHGVVIANQWDLA NGRAANDTDYGLLHADTFEPHPQYYALLIWRDFGDEMLSVQTTFDPATTLSVYAGRHADGTLTLLAINKTDQPLVAAIGL PEAEWQVKATTVSASDLLAETVSVNRDEAPTAHTPDRVYTFAPYAVTFLTFTSP
Sequences:
>Translated_534_residues MTFLCRFYTMILVFILAGCNAPVATPGSTTTPVAAPTAVLPTTAAPTLPAATSISNVPTIVIDPTTAQPFDRRLLGTNVP AWLSPYRLNDETFIQRTADLGLSLLRMPGGSWSNGYAWAACETGGEECYWPWAAKPSDFLRFARAVNADIIWTVSINGSA QEAAALVAFFNGTVDDQRPIGVDARGRDWQTVGYWARLRAETGSTDPFPVRYWEVGNEVYGAKGEVGPNCSEWGWEDVWT CDPDEYLRGKTVNGIAYDGYLAFYDAMKAVDPTIQIGAVGVEKPDEWSDWGNRVIAGAGDKLDFYVVHYYPYFQPPENPR GALQQPQRSWSTIMTELNNAFERHLGRRVPVAVTEYNLIAFQDLDNAQLMRRGVNLLFIADTIGQMATHGVVIANQWDLA NGRAANDTDYGLLHADTFEPHPQYYALLIWRDFGDEMLSVQTTFDPATTLSVYAGRHADGTLTLLAINKTDQPLVAAIGL PEAEWQVKATTVSASDLLAETVSVNRDEAPTAHTPDRVYTFAPYAVTFLTFTSP >Mature_533_residues TFLCRFYTMILVFILAGCNAPVATPGSTTTPVAAPTAVLPTTAAPTLPAATSISNVPTIVIDPTTAQPFDRRLLGTNVPA WLSPYRLNDETFIQRTADLGLSLLRMPGGSWSNGYAWAACETGGEECYWPWAAKPSDFLRFARAVNADIIWTVSINGSAQ EAAALVAFFNGTVDDQRPIGVDARGRDWQTVGYWARLRAETGSTDPFPVRYWEVGNEVYGAKGEVGPNCSEWGWEDVWTC DPDEYLRGKTVNGIAYDGYLAFYDAMKAVDPTIQIGAVGVEKPDEWSDWGNRVIAGAGDKLDFYVVHYYPYFQPPENPRG ALQQPQRSWSTIMTELNNAFERHLGRRVPVAVTEYNLIAFQDLDNAQLMRRGVNLLFIADTIGQMATHGVVIANQWDLAN GRAANDTDYGLLHADTFEPHPQYYALLIWRDFGDEMLSVQTTFDPATTLSVYAGRHADGTLTLLAINKTDQPLVAAIGLP EAEWQVKATTVSASDLLAETVSVNRDEAPTAHTPDRVYTFAPYAVTFLTFTSP
Specific function: Unknown
COG id: COG3534
COG function: function code G; Alpha-L-arabinofuranosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 58755; Mature: 58624
Theoretical pI: Translated: 4.39; Mature: 4.39
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFLCRFYTMILVFILAGCNAPVATPGSTTTPVAAPTAVLPTTAAPTLPAATSISNVPTI CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCEE VIDPTTAQPFDRRLLGTNVPAWLSPYRLNDETFIQRTADLGLSLLRMPGGSWSNGYAWAA EECCCCCCCHHHHHHCCCCCCCCCCEECCCHHHHHHHHHCCEEEEECCCCCCCCCEEEEE CETGGEECYWPWAAKPSDFLRFARAVNADIIWTVSINGSAQEAAALVAFFNGTVDDQRPI ECCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEEECCCHHHHHEEEEEECCCCCCCCCC GVDARGRDWQTVGYWARLRAETGSTDPFPVRYWEVGNEVYGAKGEVGPNCSEWGWEDVWT CCCCCCCCCCEECEEEEEEECCCCCCCCEEEEEECCCEEECCCCCCCCCCCCCCCCCCEE CDPDEYLRGKTVNGIAYDGYLAFYDAMKAVDPTIQIGAVGVEKPDEWSDWGNRVIAGAGD CCHHHHHCCCCCCCEEECCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCCEEEECCCC KLDFYVVHYYPYFQPPENPRGALQQPQRSWSTIMTELNNAFERHLGRRVPVAVTEYNLIA CEEEEEEEEECCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEE FQDLDNAQLMRRGVNLLFIADTIGQMATHGVVIANQWDLANGRAANDTDYGLLHADTFEP EECCCHHHHHHCCCCEEEEEHHHHHHHHCCEEEEECCCCCCCCCCCCCCCEEEEECCCCC HPQYYALLIWRDFGDEMLSVQTTFDPATTLSVYAGRHADGTLTLLAINKTDQPLVAAIGL CCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCCCEEEEECC PEAEWQVKATTVSASDLLAETVSVNRDEAPTAHTPDRVYTFAPYAVTFLTFTSP CCCCEEEEEEEECHHHHHHHHHHCCCCCCCCCCCCCCEEEECCEEEEEEEEECC >Mature Secondary Structure TFLCRFYTMILVFILAGCNAPVATPGSTTTPVAAPTAVLPTTAAPTLPAATSISNVPTI CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCEE VIDPTTAQPFDRRLLGTNVPAWLSPYRLNDETFIQRTADLGLSLLRMPGGSWSNGYAWAA EECCCCCCCHHHHHHCCCCCCCCCCEECCCHHHHHHHHHCCEEEEECCCCCCCCCEEEEE CETGGEECYWPWAAKPSDFLRFARAVNADIIWTVSINGSAQEAAALVAFFNGTVDDQRPI ECCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEEECCCHHHHHEEEEEECCCCCCCCCC GVDARGRDWQTVGYWARLRAETGSTDPFPVRYWEVGNEVYGAKGEVGPNCSEWGWEDVWT CCCCCCCCCCEECEEEEEEECCCCCCCCEEEEEECCCEEECCCCCCCCCCCCCCCCCCEE CDPDEYLRGKTVNGIAYDGYLAFYDAMKAVDPTIQIGAVGVEKPDEWSDWGNRVIAGAGD CCHHHHHCCCCCCCEEECCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCCEEEECCCC KLDFYVVHYYPYFQPPENPRGALQQPQRSWSTIMTELNNAFERHLGRRVPVAVTEYNLIA CEEEEEEEEECCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEE FQDLDNAQLMRRGVNLLFIADTIGQMATHGVVIANQWDLANGRAANDTDYGLLHADTFEP EECCCHHHHHHCCCCEEEEEHHHHHHHHCCEEEEECCCCCCCCCCCCCCCEEEEECCCCC HPQYYALLIWRDFGDEMLSVQTTFDPATTLSVYAGRHADGTLTLLAINKTDQPLVAAIGL CCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCCCEEEEECC PEAEWQVKATTVSASDLLAETVSVNRDEAPTAHTPDRVYTFAPYAVTFLTFTSP CCCCEEEEEEEECHHHHHHHHHHCCCCCCCCCCCCCCEEEECCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA