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The map label for this gene is sorC [H]

Identifier: 222524731

GI number: 222524731

Start: 1843947

End: 1844870

Strand: Reverse

Name: sorC [H]

Synonym: Chy400_1458

Alternate gene names: 222524731

Gene position: 1844870-1843947 (Counterclockwise)

Preceding gene: 222524732

Following gene: 222524730

Centisome position: 35.01

GC content: 47.29

Gene sequence:

>924_bases
ATGTATTTCGAGCAACAACTGACACAGAGTCAGATTGCTCAGAAACTAGGTTATTCACGATCAATGATTTCACGCCTTAT
AAGCGAAGCGCGTGAGCAGAGTATCGTGGAGATTCGAATTCATTACCCACTTCAACGAGTACGAGAACTTGAGGTGTATT
TACAGAAGGTTCTCCAGCTCAAAGAAGTTCGCGTCCTACAGCGCGGCTCCTTAGGTCATTCTGAAATGCTTCGTCGCTTG
GGAGCGCTGGCAGCGCTCCTCCTGGAGGCTCATCTGCAAGAGCACATAATTATCGGTACTTCATGGGGAACAGCGGTATA
TGAAACTGTCAATGCAGTACACAGTCAAACGTTGGAGGGATTGAGAGTTATTCAAATGATCGGCTCTCTAGGTACACTGA
ACTCAGACATTGATGGACCAGAGCTGGCCAGACGTTTGGCGCGTTTACTCGGGGGGCAATATTCAACCCTCCCATTACCA
CTAATTGTTGATAGCGAAACAACGAAGCTTGCACTACTCAATGCCCCCCACATTAGACGGGTAATGTATCAGTTCAAGCA
GATTGATCTCGCATTAGTTGGTATTGGTACTATCGATGTTGAGCATGCCAGCCTCTTGCGTGCAGGGTATCTCGACTCTT
ACCAATTGGAGTCATTGCGCGAAGCAGGTGCAGTAGGTGATGTGTGCGCTATTCATGTGGATATTGATGGTAATCTGGTA
AACACCCCATTAACACGTTGTATTGTCGGAGTAGATCCTGCGACCTTGTGCTCTATCCCAGTGCGGATCGGGGTTGCTGG
AGGTCAATCGAAAGCTTTGCCTATTGTGGCAGCCAGCCGTGCAAAGTTCATCAATTATTTAGTGACTGATGAAATAGCTG
CCCTCCGAATACAGAAGTTTTTTGAGGGTGATGGAACTCTGTGA

Upstream 100 bases:

>100_bases
GATTGTTCTTGTTTCGGTAATATGTGAGCAACCATTATAAAACCGATAACTAAGAGTTATGGAAACTCGTCGCATGGAGC
TTTTGGCAAGGATTGCCGAA

Downstream 100 bases:

>100_bases
GGAGATAAGTCATACTTATGGAAATGCTCATGTCTACATCAGAGATTTTCTCTCCCGATCATAGTAAGCTCATCAACGAA
TTAGGGAATGAACGCTTGCG

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: Sor operon activator [H]

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MYFEQQLTQSQIAQKLGYSRSMISRLISEAREQSIVEIRIHYPLQRVRELEVYLQKVLQLKEVRVLQRGSLGHSEMLRRL
GALAALLLEAHLQEHIIIGTSWGTAVYETVNAVHSQTLEGLRVIQMIGSLGTLNSDIDGPELARRLARLLGGQYSTLPLP
LIVDSETTKLALLNAPHIRRVMYQFKQIDLALVGIGTIDVEHASLLRAGYLDSYQLESLREAGAVGDVCAIHVDIDGNLV
NTPLTRCIVGVDPATLCSIPVRIGVAGGQSKALPIVAASRAKFINYLVTDEIAALRIQKFFEGDGTL

Sequences:

>Translated_307_residues
MYFEQQLTQSQIAQKLGYSRSMISRLISEAREQSIVEIRIHYPLQRVRELEVYLQKVLQLKEVRVLQRGSLGHSEMLRRL
GALAALLLEAHLQEHIIIGTSWGTAVYETVNAVHSQTLEGLRVIQMIGSLGTLNSDIDGPELARRLARLLGGQYSTLPLP
LIVDSETTKLALLNAPHIRRVMYQFKQIDLALVGIGTIDVEHASLLRAGYLDSYQLESLREAGAVGDVCAIHVDIDGNLV
NTPLTRCIVGVDPATLCSIPVRIGVAGGQSKALPIVAASRAKFINYLVTDEIAALRIQKFFEGDGTL
>Mature_307_residues
MYFEQQLTQSQIAQKLGYSRSMISRLISEAREQSIVEIRIHYPLQRVRELEVYLQKVLQLKEVRVLQRGSLGHSEMLRRL
GALAALLLEAHLQEHIIIGTSWGTAVYETVNAVHSQTLEGLRVIQMIGSLGTLNSDIDGPELARRLARLLGGQYSTLPLP
LIVDSETTKLALLNAPHIRRVMYQFKQIDLALVGIGTIDVEHASLLRAGYLDSYQLESLREAGAVGDVCAIHVDIDGNLV
NTPLTRCIVGVDPATLCSIPVRIGVAGGQSKALPIVAASRAKFINYLVTDEIAALRIQKFFEGDGTL

Specific function: Positively regulates, in the presence of L-sorbose, and negatively regulates, in the absence of L-sorbose, the transcription of the sor operon [H]

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=305, Percent_Identity=29.8360655737705, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI87082414, Length=307, Percent_Identity=23.7785016286645, Blast_Score=93, Evalue=2e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR007630
- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04545 Sigma70_r4; PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 33813; Mature: 33813

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYFEQQLTQSQIAQKLGYSRSMISRLISEAREQSIVEIRIHYPLQRVRELEVYLQKVLQL
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHH
KEVRVLQRGSLGHSEMLRRLGALAALLLEAHLQEHIIIGTSWGTAVYETVNAVHSQTLEG
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHH
LRVIQMIGSLGTLNSDIDGPELARRLARLLGGQYSTLPLPLIVDSETTKLALLNAPHIRR
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEECCHHHHH
VMYQFKQIDLALVGIGTIDVEHASLLRAGYLDSYQLESLREAGAVGDVCAIHVDIDGNLV
HHHHHHHHCEEEEEECEEEHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEEEECCCEE
NTPLTRCIVGVDPATLCSIPVRIGVAGGQSKALPIVAASRAKFINYLVTDEIAALRIQKF
CCCHHHHEECCCHHHHHHCCEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH
FEGDGTL
HCCCCCC
>Mature Secondary Structure
MYFEQQLTQSQIAQKLGYSRSMISRLISEAREQSIVEIRIHYPLQRVRELEVYLQKVLQL
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHH
KEVRVLQRGSLGHSEMLRRLGALAALLLEAHLQEHIIIGTSWGTAVYETVNAVHSQTLEG
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHH
LRVIQMIGSLGTLNSDIDGPELARRLARLLGGQYSTLPLPLIVDSETTKLALLNAPHIRR
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEECCHHHHH
VMYQFKQIDLALVGIGTIDVEHASLLRAGYLDSYQLESLREAGAVGDVCAIHVDIDGNLV
HHHHHHHHCEEEEEECEEEHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEEEECCCEE
NTPLTRCIVGVDPATLCSIPVRIGVAGGQSKALPIVAASRAKFINYLVTDEIAALRIQKF
CCCHHHHEECCCHHHHHHCCEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH
FEGDGTL
HCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7947968 [H]