| Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
|---|---|
| Accession | NC_012032 |
| Length | 5,268,950 |
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The map label for this gene is crp [H]
Identifier: 222524613
GI number: 222524613
Start: 1709386
End: 1710036
Strand: Reverse
Name: crp [H]
Synonym: Chy400_1337
Alternate gene names: 222524613
Gene position: 1710036-1709386 (Counterclockwise)
Preceding gene: 222524614
Following gene: 222524611
Centisome position: 32.45
GC content: 60.52
Gene sequence:
>651_bases ATGACGATTGAAGACCTGCGCGCTATTCCGTTATTTGCCACGCTCGATGAGGCAACTCTGGCCGATACTGCCCGTCGTGT GCAGATATGTCATTATCGCCCCGGTCAGCATATCATCTATGAAGACCAGCCGGCACACGCGATCTTCTTTGTGGTGCGCG GTCGGGTCAGACTGTCACGCACGGCACCTGATGGTCGCGAGCAGGTGCTGGCAATGGTTGGGCCGGGAGAATATTTTAAC GCTGTGCCGATCTTCGACGCCGGGCTAAGTCCGGCCACTGCTCGTGCGATGAGTCAGGTCACCTGTTTACTGCTGGCACG CGAGGATTTGCTGGCGCTCATTCGGAAACACCCCGATCTGGCGCTGGCAGCGCTCTCTGATCTGGCCGGACAGTTACGTG AGCTGGTTACTCTGGTTGAGGATTTGGCCTTTCGTTCGGTACGTGCCCGTCTGGCGCGCCTGTTGCTGGCCGAGGCAGCC GAAGGCACCGCCGAAGTCACGCAGCAGGAATTGGCCGAACGTACCGGTACCGTGCGCGAGATTGCCGGACGGGCCCTACG GCGGATGGCCGAAGAACGCCTGGTCAAGTTAGAGCGTGGCCGGGTGGTTGTGCTGGATCGAGTGCGGCTGGCGAAGGTGG CCGAAGAGTAG
Upstream 100 bases:
>100_bases CCCCACCGTAACTTACTCACGTACAAAACTCTCTATAATGAATAGCAACAGCGGCACTGTGCCTGCTGTGCAGTATGTGA TACACATTGTGGGCAGCGCA
Downstream 100 bases:
>100_bases GGAGAAGCTATCTCGGAGCAGTGAAGTGATGTGACAGGCATCACACCTCTCGCGAGTTTCGCGAGCGTTTGTACGATGAT GGCATTCGTTCACGCTCCTA
Product: Crp/Fnr family transcriptional regulator
Products: NA
Alternate protein names: cAMP receptor protein; cAMP regulatory protein [H]
Number of amino acids: Translated: 216; Mature: 215
Protein sequence:
>216_residues MTIEDLRAIPLFATLDEATLADTARRVQICHYRPGQHIIYEDQPAHAIFFVVRGRVRLSRTAPDGREQVLAMVGPGEYFN AVPIFDAGLSPATARAMSQVTCLLLAREDLLALIRKHPDLALAALSDLAGQLRELVTLVEDLAFRSVRARLARLLLAEAA EGTAEVTQQELAERTGTVREIAGRALRRMAEERLVKLERGRVVVLDRVRLAKVAEE
Sequences:
>Translated_216_residues MTIEDLRAIPLFATLDEATLADTARRVQICHYRPGQHIIYEDQPAHAIFFVVRGRVRLSRTAPDGREQVLAMVGPGEYFN AVPIFDAGLSPATARAMSQVTCLLLAREDLLALIRKHPDLALAALSDLAGQLRELVTLVEDLAFRSVRARLARLLLAEAA EGTAEVTQQELAERTGTVREIAGRALRRMAEERLVKLERGRVVVLDRVRLAKVAEE >Mature_215_residues TIEDLRAIPLFATLDEATLADTARRVQICHYRPGQHIIYEDQPAHAIFFVVRGRVRLSRTAPDGREQVLAMVGPGEYFNA VPIFDAGLSPATARAMSQVTCLLLAREDLLALIRKHPDLALAALSDLAGQLRELVTLVEDLAFRSVRARLARLLLAEAAE GTAEVTQQELAERTGTVREIAGRALRRMAEERLVKLERGRVVVLDRVRLAKVAEE
Specific function: This protein complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of one or more genes involved in the induction of competence [H]
COG id: COG0664
COG function: function code T; cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH crp-type DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1789756, Length=188, Percent_Identity=24.468085106383, Blast_Score=68, Evalue=5e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018490 - InterPro: IPR018488 - InterPro: IPR000595 - InterPro: IPR001808 - InterPro: IPR012318 - InterPro: IPR014710 - InterPro: IPR018335 - InterPro: IPR011991 [H]
Pfam domain/function: PF00027 cNMP_binding; PF00325 Crp [H]
EC number: NA
Molecular weight: Translated: 23939; Mature: 23808
Theoretical pI: Translated: 7.58; Mature: 7.58
Prosite motif: PS50042 CNMP_BINDING_3 ; PS51063 HTH_CRP_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIEDLRAIPLFATLDEATLADTARRVQICHYRPGQHIIYEDQPAHAIFFVVRGRVRLSR CCHHHHHHCCHHHCCCHHHHHHHHHHHEEEEECCCCEEEECCCCCCEEEEEEECCEEEEC TAPDGREQVLAMVGPGEYFNAVPIFDAGLSPATARAMSQVTCLLLAREDLLALIRKHPDL CCCCHHHHEEEEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH ALAALSDLAGQLRELVTLVEDLAFRSVRARLARLLLAEAAEGTAEVTQQELAERTGTVRE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHH IAGRALRRMAEERLVKLERGRVVVLDRVRLAKVAEE HHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHCC >Mature Secondary Structure TIEDLRAIPLFATLDEATLADTARRVQICHYRPGQHIIYEDQPAHAIFFVVRGRVRLSR CHHHHHHCCHHHCCCHHHHHHHHHHHEEEEECCCCEEEECCCCCCEEEEEEECCEEEEC TAPDGREQVLAMVGPGEYFNAVPIFDAGLSPATARAMSQVTCLLLAREDLLALIRKHPDL CCCCHHHHEEEEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH ALAALSDLAGQLRELVTLVEDLAFRSVRARLARLLLAEAAEGTAEVTQQELAERTGTVRE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHH IAGRALRRMAEERLVKLERGRVVVLDRVRLAKVAEE HHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1542653; 7542800 [H]