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The map label for this gene is rnhB

Identifier: 222524413

GI number: 222524413

Start: 1438297

End: 1438935

Strand: Reverse

Name: rnhB

Synonym: Chy400_1137

Alternate gene names: 222524413

Gene position: 1438935-1438297 (Counterclockwise)

Preceding gene: 222524414

Following gene: 222524412

Centisome position: 27.31

GC content: 57.12

Gene sequence:

>639_bases
ATGTTGCCCGATCTGAGTATTGAGCACGACTTGCAAAGGCGTGGCTATGCAAATCTGGCCGGTATTGACGAAGCCGGTCG
TGGATGCTGGGCAGGGCCAGTGGTGGCAGCGGCAGTTGTACTCTCTCCAGCGGTCTATCGGCAGCCGGATCTGCTGGCCG
GCGTGAACGACTCGAAACAATTGACAGCCGGTGCCCGTGAGCGCATCTACACCAGCATTCAGACCCATGCGCTGGGCGTG
GGTGTCGGGATTGTACCGGCATTTCTGATCGATGCGTATGGTATTCTGCCGGCAACCAGACTGGCAATGATCCAGGCCTT
GCTGGCGCTGCCGTGTGCAGTTGATGCCTTGATCATTGATGCTGTGCAGTTGCCTGGTATATCCCTGCCGCAGACGGCAC
TGGTGCGCGGTGATGAACGGTCACTCTCAATTGCGGCTGCATCCATCATTGCCAAAGTTACCCGTGATCGGCTGATGGCA
ACAGCCGATCACTGCTTTCCACACTACGGTTTTGCACTTCATAAAGGTTATGGCACAGCCGTACACCGACGCGCACTCGC
TCAATATGGCCCCTCGCCACTGCATCGGCGTACCTTTCAGCCGGTGATAGAGGCTTTGCTGTCGCTGGAGCAATCATGA

Upstream 100 bases:

>100_bases
GGGACATTGCCGAAAACGGTACCATTTGGCGATTTTATGCTTCAGGTACAGCGCGTACAGGTGGCAGACAGCAGTGTACT
GGTGATGATTGGAAAACCGA

Downstream 100 bases:

>100_bases
ACTTGCAAGAACACCTGATCACTTCGACTTTGCTGGCCGTTAGCCTGTACCCTCGCCAACCGCTGGCAGCAGCACTGGTG
ATCGCCGGTGGTGTTTTGGT

Product: ribonuclease HII

Products: NA

Alternate protein names: RNase HII

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MLPDLSIEHDLQRRGYANLAGIDEAGRGCWAGPVVAAAVVLSPAVYRQPDLLAGVNDSKQLTAGARERIYTSIQTHALGV
GVGIVPAFLIDAYGILPATRLAMIQALLALPCAVDALIIDAVQLPGISLPQTALVRGDERSLSIAAASIIAKVTRDRLMA
TADHCFPHYGFALHKGYGTAVHRRALAQYGPSPLHRRTFQPVIEALLSLEQS

Sequences:

>Translated_212_residues
MLPDLSIEHDLQRRGYANLAGIDEAGRGCWAGPVVAAAVVLSPAVYRQPDLLAGVNDSKQLTAGARERIYTSIQTHALGV
GVGIVPAFLIDAYGILPATRLAMIQALLALPCAVDALIIDAVQLPGISLPQTALVRGDERSLSIAAASIIAKVTRDRLMA
TADHCFPHYGFALHKGYGTAVHRRALAQYGPSPLHRRTFQPVIEALLSLEQS
>Mature_212_residues
MLPDLSIEHDLQRRGYANLAGIDEAGRGCWAGPVVAAAVVLSPAVYRQPDLLAGVNDSKQLTAGARERIYTSIQTHALGV
GVGIVPAFLIDAYGILPATRLAMIQALLALPCAVDALIIDAVQLPGISLPQTALVRGDERSLSIAAASIIAKVTRDRLMA
TADHCFPHYGFALHKGYGTAVHRRALAQYGPSPLHRRTFQPVIEALLSLEQS

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids

COG id: COG0164

COG function: function code L; Ribonuclease HII

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family

Homologues:

Organism=Escherichia coli, GI1786380, Length=188, Percent_Identity=47.3404255319149, Blast_Score=152, Evalue=2e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNH2_CHLAA (A9WIH1)

Other databases:

- EMBL:   CP000909
- RefSeq:   YP_001634660.1
- ProteinModelPortal:   A9WIH1
- SMR:   A9WIH1
- GeneID:   5825837
- GenomeReviews:   CP000909_GR
- KEGG:   cau:Caur_1039
- HOGENOM:   HBG584843
- OMA:   RLGPTPI
- ProtClustDB:   PRK00015
- GO:   GO:0005737
- HAMAP:   MF_00052_B
- InterPro:   IPR022898
- InterPro:   IPR001352
- InterPro:   IPR012337
- PANTHER:   PTHR10954

Pfam domain/function: PF01351 RNase_HII; SSF53098 RNaseH_fold

EC number: =3.1.26.4

Molecular weight: Translated: 22561; Mature: 22561

Theoretical pI: Translated: 8.10; Mature: 8.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPDLSIEHDLQRRGYANLAGIDEAGRGCWAGPVVAAAVVLSPAVYRQPDLLAGVNDSKQ
CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCHH
LTAGARERIYTSIQTHALGVGVGIVPAFLIDAYGILPATRLAMIQALLALPCAVDALIID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVQLPGISLPQTALVRGDERSLSIAAASIIAKVTRDRLMATADHCFPHYGFALHKGYGTA
HHHCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHH
VHRRALAQYGPSPLHRRTFQPVIEALLSLEQS
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLPDLSIEHDLQRRGYANLAGIDEAGRGCWAGPVVAAAVVLSPAVYRQPDLLAGVNDSKQ
CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCHH
LTAGARERIYTSIQTHALGVGVGIVPAFLIDAYGILPATRLAMIQALLALPCAVDALIID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVQLPGISLPQTALVRGDERSLSIAAASIIAKVTRDRLMATADHCFPHYGFALHKGYGTA
HHHCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHH
VHRRALAQYGPSPLHRRTFQPVIEALLSLEQS
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA