Definition Chloroflexus sp. Y-400-fl chromosome, complete genome.
Accession NC_012032
Length 5,268,950

Click here to switch to the map view.

The map label for this gene is ygfJ [C]

Identifier: 222524395

GI number: 222524395

Start: 1416597

End: 1417202

Strand: Direct

Name: ygfJ [C]

Synonym: Chy400_1119

Alternate gene names: 222524395

Gene position: 1416597-1417202 (Clockwise)

Preceding gene: 222524394

Following gene: 222524396

Centisome position: 26.89

GC content: 60.23

Gene sequence:

>606_bases
ATGAAAATCTACGGTCTCCTGCTGGCTGCCGGCCAATCTTCTCGTATGGGGCAACCCAAACAGCTCCTATCCTGGCGTGG
TCGCCCGTTAGTGACGTATATCGCCAGCGAAGCTCTCGCCAGTCACCTGGCCGGCCTGACCGTGGTCGTGGGTGCTGTCG
AGGCAGCCGTGCGTACCGCCGTACACAATCTCCCCCTCACCATCATCACAAATCCAGCCTACAGCGCCGGCTTAAGCACC
TCGCTCGTAGCCGGTCTGCGTGCCTTACCCGACGATGCCGCTGCTGCGATGGTATTGCTGGTTGATCAGCCCCTGGTCAC
TACCCGGTTGATCAACCAGCTCCTCAGTGCCTATCAGGCAACCCCCGGTGCAGTAGCGCTCGTTCCGTTGTACCAGGGTC
AGCGTGGCAATCCGGTCATCATTGCCGCCTCACTCTTCCCCGAACTCTACACCCTGCACGGCGACACCGGCGCCCGTGTC
ATCTTTCGCCGCTACGCAGATCGGGTTATCGAGCTGGAAGTTGACGATCCGGCTGTAGTTACCGATGTTGATACCCCAAC
TGCCTGGGAAGCGCTGACGCAGCAAGAGAGTGAACAGACCCCCTGA

Upstream 100 bases:

>100_bases
TGATAACCCGGATTGTTGATGATCAGGTACTGTGCGATCTCCGTAGCGTTTTTCCACACGAAGATACCACCCTGATCAAT
GTCGTGCGTGAGGTCTGGCA

Downstream 100 bases:

>100_bases
CACCATATCAGTCAAGGTATGCTATAATCGCGTGATGTCACGGGGAGCGTGAATCGGGAAGCTCCCCAATAGTCTTTCTG
TTTCGCCATCTCGCCGGAGC

Product: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase

Products: NA

Alternate protein names: MobA-Like Protein-Like Protein; 4-Diphosphocytidyl-2C-Methyl-D-Erythritolsynthas E; Molybdenum Cofactor Biosynthesis Protein; Molybdenum Hydroxylase Accessory Protein YgfJ Family; Molybdenum Cofactor Cytidylyltransferase; Molybdopterin Biosynthesis; Protein Family UPF; Molybdopterin-Guanine Dinucleotide Biosynthesis Protein A; 4-Diphosphocytidyl-2c-Methyl-D-Erythritol Synthase; MobA-Like Protein; L-Seryl-TRNA(Ser) Selenium Transferase Protein; MobA-Like Protein-Like; Purine Catabolism Protein PucB; Metal Dependent Phosphohydrolase; Nucleotide-Diphospho-Sugar Transferase; UDP-N-Acetylglucosamine Pyrophosphorylase

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MKIYGLLLAAGQSSRMGQPKQLLSWRGRPLVTYIASEALASHLAGLTVVVGAVEAAVRTAVHNLPLTIITNPAYSAGLST
SLVAGLRALPDDAAAAMVLLVDQPLVTTRLINQLLSAYQATPGAVALVPLYQGQRGNPVIIAASLFPELYTLHGDTGARV
IFRRYADRVIELEVDDPAVVTDVDTPTAWEALTQQESEQTP

Sequences:

>Translated_201_residues
MKIYGLLLAAGQSSRMGQPKQLLSWRGRPLVTYIASEALASHLAGLTVVVGAVEAAVRTAVHNLPLTIITNPAYSAGLST
SLVAGLRALPDDAAAAMVLLVDQPLVTTRLINQLLSAYQATPGAVALVPLYQGQRGNPVIIAASLFPELYTLHGDTGARV
IFRRYADRVIELEVDDPAVVTDVDTPTAWEALTQQESEQTP
>Mature_201_residues
MKIYGLLLAAGQSSRMGQPKQLLSWRGRPLVTYIASEALASHLAGLTVVVGAVEAAVRTAVHNLPLTIITNPAYSAGLST
SLVAGLRALPDDAAAAMVLLVDQPLVTTRLINQLLSAYQATPGAVALVPLYQGQRGNPVIIAASLFPELYTLHGDTGARV
IFRRYADRVIELEVDDPAVVTDVDTPTAWEALTQQESEQTP

Specific function: Unknown

COG id: COG2068

COG function: function code R; Uncharacterized MobA-related protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21352; Mature: 21352

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIYGLLLAAGQSSRMGQPKQLLSWRGRPLVTYIASEALASHLAGLTVVVGAVEAAVRTA
CEEEEEEEECCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHNLPLTIITNPAYSAGLSTSLVAGLRALPDDAAAAMVLLVDQPLVTTRLINQLLSAYQA
HHCCCEEEEECCCCHHCCHHHHHHHHHCCCCHHHHEEEEEECCCHHHHHHHHHHHHHHCC
TPGAVALVPLYQGQRGNPVIIAASLFPELYTLHGDTGARVIFRRYADRVIELEVDDPAVV
CCCCEEEEEEECCCCCCEEEEEHHHCCHHEEEECCCCHHHHHHHHHCEEEEEEECCCEEE
TDVDTPTAWEALTQQESEQTP
EECCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKIYGLLLAAGQSSRMGQPKQLLSWRGRPLVTYIASEALASHLAGLTVVVGAVEAAVRTA
CEEEEEEEECCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHNLPLTIITNPAYSAGLSTSLVAGLRALPDDAAAAMVLLVDQPLVTTRLINQLLSAYQA
HHCCCEEEEECCCCHHCCHHHHHHHHHCCCCHHHHEEEEEECCCHHHHHHHHHHHHHHCC
TPGAVALVPLYQGQRGNPVIIAASLFPELYTLHGDTGARVIFRRYADRVIELEVDDPAVV
CCCCEEEEEEECCCCCCEEEEEHHHCCHHEEEECCCCHHHHHHHHHCEEEEEEECCCEEE
TDVDTPTAWEALTQQESEQTP
EECCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA