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The map label for this gene is deoC [H]

Identifier: 222524041

GI number: 222524041

Start: 945553

End: 946344

Strand: Direct

Name: deoC [H]

Synonym: Chy400_0756

Alternate gene names: 222524041

Gene position: 945553-946344 (Clockwise)

Preceding gene: 222524039

Following gene: 222524042

Centisome position: 17.95

GC content: 56.82

Gene sequence:

>792_bases
GTGGAAGATCTAATCGCACAGGTGCGGTCACACATAGATGCCCTGGTTGGATTACCGGTTGGTACACCCCTGGCGCATCC
ACCAGTCCCACCTGCTTCAGATACCCCTATTGCCAGTTTTATCGACCATACACTGCTCAAGCCTGAAGCGACAGTTGATC
AGATTGACCGGCTGTGCAGCGAGGCCGAGCGTTACCGGTTCGCCAGTGTTTGTGTCAATCCGCGTTATGTTGAACGTTGT
GCGCGTGCGCTCAGCGGTTCGGCAGTGCGGGTCTGCACGGTGATAGGCTTCCCGCTCGGAGCCACCACAACAAAAGTGAA
GGTCTTCGAGACAGTACAGGCTATCGGGCATGGGGCACGTGAAGTAGACATGGTGCTGGCGATTGGGGCACTTCGCGGAC
GTGAATATCACGCTGTGGTTGATGATATTCGGGCTGTTACCGATGCTGCCCATGCCAGTGGCGTATTAGTAAAAGTTATT
CTGGAAACTGGCCTGTTGACCGATTTTGAGAAGGTGATGGCCTGTATGCTGGCAGTACGGGCGGGTGCCGACTTTGTGAA
AACCAGCACCGGTTTCGGGCCGGGTGGGGCGACCGTTGCCGATATTCGCCTCATGCGGGCAGCGGTAGGGCCGACCATTG
GCGTCAAAGCATCAGGTGGCGTGCGTTCACTGGCAATGGCCCAGGAACTGATCGCAGCCGGGGCAACCCGAATCGGCACG
TCGGCAGGTGTTGCCATTGTGCAGGAGGCTGAAGGCACAAACCTTGAACCGCGAAATAGCGACACGTATTAA

Upstream 100 bases:

>100_bases
GCCTATCATTGCTGTTCAGCAAGCAGCTTGCGCGGCTATGCTACAATAGCATCGTGAATGATGTCAGAACCTGGCGCCAG
TCGTCAAGAGGAGCCTCGTC

Downstream 100 bases:

>100_bases
GATAAAGCATATCGCATCGTATATCTGTACTTTATTAAGGAGGAACGAGTGAGCATTCTGATCGATGCCAACACCCGACT
GTTGGTACAGGGAATTACCG

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MEDLIAQVRSHIDALVGLPVGTPLAHPPVPPASDTPIASFIDHTLLKPEATVDQIDRLCSEAERYRFASVCVNPRYVERC
ARALSGSAVRVCTVIGFPLGATTTKVKVFETVQAIGHGAREVDMVLAIGALRGREYHAVVDDIRAVTDAAHASGVLVKVI
LETGLLTDFEKVMACMLAVRAGADFVKTSTGFGPGGATVADIRLMRAAVGPTIGVKASGGVRSLAMAQELIAAGATRIGT
SAGVAIVQEAEGTNLEPRNSDTY

Sequences:

>Translated_263_residues
MEDLIAQVRSHIDALVGLPVGTPLAHPPVPPASDTPIASFIDHTLLKPEATVDQIDRLCSEAERYRFASVCVNPRYVERC
ARALSGSAVRVCTVIGFPLGATTTKVKVFETVQAIGHGAREVDMVLAIGALRGREYHAVVDDIRAVTDAAHASGVLVKVI
LETGLLTDFEKVMACMLAVRAGADFVKTSTGFGPGGATVADIRLMRAAVGPTIGVKASGGVRSLAMAQELIAAGATRIGT
SAGVAIVQEAEGTNLEPRNSDTY
>Mature_263_residues
MEDLIAQVRSHIDALVGLPVGTPLAHPPVPPASDTPIASFIDHTLLKPEATVDQIDRLCSEAERYRFASVCVNPRYVERC
ARALSGSAVRVCTVIGFPLGATTTKVKVFETVQAIGHGAREVDMVLAIGALRGREYHAVVDDIRAVTDAAHASGVLVKVI
LETGLLTDFEKVMACMLAVRAGADFVKTSTGFGPGGATVADIRLMRAAVGPTIGVKASGGVRSLAMAQELIAAGATRIGT
SAGVAIVQEAEGTNLEPRNSDTY

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=216, Percent_Identity=34.2592592592593, Blast_Score=79, Evalue=4e-15,
Organism=Escherichia coli, GI1790841, Length=205, Percent_Identity=34.1463414634146, Blast_Score=92, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17533015, Length=175, Percent_Identity=30.2857142857143, Blast_Score=68, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 27458; Mature: 27458

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDLIAQVRSHIDALVGLPVGTPLAHPPVPPASDTPIASFIDHTLLKPEATVDQIDRLCS
CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHH
EAERYRFASVCVNPRYVERCARALSGSAVRVCTVIGFPLGATTTKVKVFETVQAIGHGAR
HHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEHHHHCCCCCCCCHHHHHHHHHHHHCCCHH
EVDMVLAIGALRGREYHAVVDDIRAVTDAAHASGVLVKVILETGLLTDFEKVMACMLAVR
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHHHH
AGADFVKTSTGFGPGGATVADIRLMRAAVGPTIGVKASGGVRSLAMAQELIAAGATRIGT
CCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHCHHHCCC
SAGVAIVQEAEGTNLEPRNSDTY
CCCEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MEDLIAQVRSHIDALVGLPVGTPLAHPPVPPASDTPIASFIDHTLLKPEATVDQIDRLCS
CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHH
EAERYRFASVCVNPRYVERCARALSGSAVRVCTVIGFPLGATTTKVKVFETVQAIGHGAR
HHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEHHHHCCCCCCCCHHHHHHHHHHHHCCCHH
EVDMVLAIGALRGREYHAVVDDIRAVTDAAHASGVLVKVILETGLLTDFEKVMACMLAVR
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHHHH
AGADFVKTSTGFGPGGATVADIRLMRAAVGPTIGVKASGGVRSLAMAQELIAAGATRIGT
CCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHCHHHCCC
SAGVAIVQEAEGTNLEPRNSDTY
CCCEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA