| Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
|---|---|
| Accession | NC_012032 |
| Length | 5,268,950 |
Click here to switch to the map view.
The map label for this gene is fmdA [H]
Identifier: 222524026
GI number: 222524026
Start: 925725
End: 926666
Strand: Direct
Name: fmdA [H]
Synonym: Chy400_0741
Alternate gene names: 222524026
Gene position: 925725-926666 (Clockwise)
Preceding gene: 222524025
Following gene: 222524034
Centisome position: 17.57
GC content: 56.26
Gene sequence:
>942_bases ATGGCTGAGCACGTCCTGGAAAAAGGCAAAGTTCATCACAAGTGGGACAACAGCTTACCCCCGGCAATCGAGATCGCTTC TGGCGACGTCGTACACTGTGAAACGGCAGAGGTAACGAATAATCAGGTGACACCCGGCTGCGATGCCAGCGTGTTACTCA ATCTCGACTTTGGACAACTCTACCCGCTGGCCGGTCCGATCTTTGTCAAAGATGCCATGCCCGGCGATATTCTGGAAGTT GAGATTCTGCGTCTGCAACCACTCGATTGGGGCTGGACGGGTATCATTCCCGGTCTAGGGTTGCTGGCCCAAGACTTCAC AGCACCGTATATCCGCCATTTCGACCTGAGCAACGGCCAGACTGCTCCCCTCCGCGATGACATCCATATTCCGCTTCAGC CATTCTGTGGCACGATGGGGGTTGCCCTTGACGAACCTGGCGCCTTCGATGTGTTGCCAACCGGCAAAGGGGGCGGCAAT ATTGATACCCGCCATCTGAATGTTGGTGCCAAACTCTACCTGCCGGTCTTCGTGCCGGGCGCCCTTTTCTCGGCAGGCGA TTGCCATGCAGCGCAGGGCGATGGTGAAGTGTGCGTCACCGGTATCGAGTGCCCGATGCAATTCTCGCTGCGCTTCAATG TGATCAAGGGTCGTTCCTTGAAGCCGTGGCGCTACCACTTCTACACGCCACCCGGACCGATTCAGCCGGCATACGATGCT CGTGGGTATTACGTGACGACGGCTATCGGCCCCGATCTGATGGAGAACGCCCGCAATGCGGTGCGCGATATGATTGAATG GCTTACCGATAATTATCACCTGAGCCGTGAAGATGCTTACGTGCTGTGCAGTCTGGCCGGTGATCTACGCATTAGCCAGA TCGTTGATGCCCCGAACTGGTGTGTCTCGTTTTATATGGCGTTGAGCGTCTTCCGCTCGTGA
Upstream 100 bases:
>100_bases GCGGTTGGTGATGAGTGAAATCCACGCCATTAGCGGGATCAAGCGCACAATTACCTGCATGGTCATTGGATGAAGTGTGT AGCAACAGAAGGGGATTACC
Downstream 100 bases:
>100_bases GATGGTCGGTTGACAAATATCCGCACAACAACACCATATCCGTCAGGAACCGGGGGTAACGCATTGCTGTTACCCCCGAT GGTTTGTTATTCGTTCTGCC
Product: acetamidase/formamidase
Products: NA
Alternate protein names: Formamide amidohydrolase [H]
Number of amino acids: Translated: 313; Mature: 312
Protein sequence:
>313_residues MAEHVLEKGKVHHKWDNSLPPAIEIASGDVVHCETAEVTNNQVTPGCDASVLLNLDFGQLYPLAGPIFVKDAMPGDILEV EILRLQPLDWGWTGIIPGLGLLAQDFTAPYIRHFDLSNGQTAPLRDDIHIPLQPFCGTMGVALDEPGAFDVLPTGKGGGN IDTRHLNVGAKLYLPVFVPGALFSAGDCHAAQGDGEVCVTGIECPMQFSLRFNVIKGRSLKPWRYHFYTPPGPIQPAYDA RGYYVTTAIGPDLMENARNAVRDMIEWLTDNYHLSREDAYVLCSLAGDLRISQIVDAPNWCVSFYMALSVFRS
Sequences:
>Translated_313_residues MAEHVLEKGKVHHKWDNSLPPAIEIASGDVVHCETAEVTNNQVTPGCDASVLLNLDFGQLYPLAGPIFVKDAMPGDILEV EILRLQPLDWGWTGIIPGLGLLAQDFTAPYIRHFDLSNGQTAPLRDDIHIPLQPFCGTMGVALDEPGAFDVLPTGKGGGN IDTRHLNVGAKLYLPVFVPGALFSAGDCHAAQGDGEVCVTGIECPMQFSLRFNVIKGRSLKPWRYHFYTPPGPIQPAYDA RGYYVTTAIGPDLMENARNAVRDMIEWLTDNYHLSREDAYVLCSLAGDLRISQIVDAPNWCVSFYMALSVFRS >Mature_312_residues AEHVLEKGKVHHKWDNSLPPAIEIASGDVVHCETAEVTNNQVTPGCDASVLLNLDFGQLYPLAGPIFVKDAMPGDILEVE ILRLQPLDWGWTGIIPGLGLLAQDFTAPYIRHFDLSNGQTAPLRDDIHIPLQPFCGTMGVALDEPGAFDVLPTGKGGGNI DTRHLNVGAKLYLPVFVPGALFSAGDCHAAQGDGEVCVTGIECPMQFSLRFNVIKGRSLKPWRYHFYTPPGPIQPAYDAR GYYVTTAIGPDLMENARNAVRDMIEWLTDNYHLSREDAYVLCSLAGDLRISQIVDAPNWCVSFYMALSVFRS
Specific function: Hydrolyzes formamide with the production of ammonia which can be used as a source of nitrogen for growth. Also acts, more slowly, on acetamide, propanamide and butanamide [H]
COG id: COG2421
COG function: function code C; Predicted acetamidase/formamidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the acetamidase/formamidase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004304 [H]
Pfam domain/function: PF03069 FmdA_AmdA [H]
EC number: =3.5.1.49 [H]
Molecular weight: Translated: 34310; Mature: 34178
Theoretical pI: Translated: 4.76; Mature: 4.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEHVLEKGKVHHKWDNSLPPAIEIASGDVVHCETAEVTNNQVTPGCDASVLLNLDFGQL CCCHHHHCCCEEECCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCC YPLAGPIFVKDAMPGDILEVEILRLQPLDWGWTGIIPGLGLLAQDFTAPYIRHFDLSNGQ CCCCCCEEEECCCCCCEEEEEEEEEECCCCCCHHHHHCHHHHHHHHCCCCEEEEECCCCC TAPLRDDIHIPLQPFCGTMGVALDEPGAFDVLPTGKGGGNIDTRHLNVGAKLYLPVFVPG CCCCCCCCCCCCHHCCCCCCEEECCCCCEEEEECCCCCCCCEEEEEECCEEEEEEEEECC ALFSAGDCHAAQGDGEVCVTGIECPMQFSLRFNVIKGRSLKPWRYHFYTPPGPIQPAYDA HHCCCCCCCCCCCCCCEEEEECCCCEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCCC RGYYVTTAIGPDLMENARNAVRDMIEWLTDNYHLSREDAYVLCSLAGDLRISQIVDAPNW CCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCEEEHHHCCCHH CVSFYMALSVFRS HHHHHHHHHHHCC >Mature Secondary Structure AEHVLEKGKVHHKWDNSLPPAIEIASGDVVHCETAEVTNNQVTPGCDASVLLNLDFGQL CCHHHHCCCEEECCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCC YPLAGPIFVKDAMPGDILEVEILRLQPLDWGWTGIIPGLGLLAQDFTAPYIRHFDLSNGQ CCCCCCEEEECCCCCCEEEEEEEEEECCCCCCHHHHHCHHHHHHHHCCCCEEEEECCCCC TAPLRDDIHIPLQPFCGTMGVALDEPGAFDVLPTGKGGGNIDTRHLNVGAKLYLPVFVPG CCCCCCCCCCCCHHCCCCCCEEECCCCCEEEEECCCCCCCCEEEEEECCEEEEEEEEECC ALFSAGDCHAAQGDGEVCVTGIECPMQFSLRFNVIKGRSLKPWRYHFYTPPGPIQPAYDA HHCCCCCCCCCCCCCCEEEEECCCCEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCCC RGYYVTTAIGPDLMENARNAVRDMIEWLTDNYHLSREDAYVLCSLAGDLRISQIVDAPNW CCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCCEEEHHHCCCHH CVSFYMALSVFRS HHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8841393 [H]