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The map label for this gene is rarA [H]

Identifier: 222523744

GI number: 222523744

Start: 547742

End: 549235

Strand: Direct

Name: rarA [H]

Synonym: Chy400_0450

Alternate gene names: 222523744

Gene position: 547742-549235 (Clockwise)

Preceding gene: 222523743

Following gene: 222523745

Centisome position: 10.4

GC content: 58.84

Gene sequence:

>1494_bases
ATGCCACCTAAACCACGAGGAACAACTCTGTTCGATGCCCAACGACAGCAGGCGCTGCAACAACAGGCGCCACTGGCTGC
CCGTATGCGCCCGCGCACACTCGAAGAGTTCGTTGGACAGCATCATCTTGTCGGTGAAGGCAAACTGCTCCGGCGAGCGA
TTGCGAATGATCAGCTCTTTTCGCTGATTCTGTGGGGGCCACCCGGCAGCGGGAAGACGACGCTGGCGCAAATTATTGCG
CACAGCACGAAAGCCCACTTCGAGCCGATAAGTGCAGTTAGTGCCGGAGTAAACGATTTGCGGCGAGTGGTGCAAGAGGC
GCAAGACCGGCTCGGTATGTTCCAGCAGCGCACGGTAGTCTTTATCGACGAGATTCATCGCTTTAACAAGAGCCAGCAAG
ACGCAATCTTGCCCTACGTCGAAGATGGCACCATCATTTTGATCGGGGCAACGACTGAAAATCCATCCTTCGAGGTCAAT
TCAGCGCTCCTCTCGCGGGCCAGGGTCTTCAAACTCGAAGCCCTTACCGATGAAGAGATCGGGGTTCTGATTGACCGGGC
ACTCACCGACCGGGAACGCGGTTTGGGGGATTTGAAAATTATGCTGGCTCGTGATGCGCGTGACTACCTGGTCAATATGG
CAAACGGTGATGCGCGGACGGCGCTGAATGCCCTCGAAGCAGCGGCGCGCTCGAAACCGCCGGCGATTGGCGAAACCCGG
TTGATCACCGTCGATGATATTCGTGATGCGCTGCAAAGCCGGGCTGTGCGCTACGACAAGCACGGTGAACTGCATTACGA
TGCAATTTCGGCGTTGCACAAGAGTGTCCGCGATAGCGATCCCGACGGCGCACTCTACTGGTTGGGGCGGATGCTCGATG
GCGGTGAAGACCCTCTCTATATTGCGCGACGCCTGGTGCGGATCGCCGTCGAAGACATTGGGCTGGCCGATCCGCAGGCA
CTCCCGCAAACAATCGCTGCCCAACAAGCGGTTCACTTTCTCGGTCAACCGGAAGGTGAACTGGCGCTGGCGCAGGCCGT
GGTTTATCTTTGTCTGGCACCGAAGAGTAATGCGCTCTACCGGGCTTATGGTGCGGTGCAACGCGACGTTGCCGAGACGC
GGAACGAACCGGTACCGCTCCATTTACGAAACGCGCCAACGCAGTTGATGAAACGGTTAGGCTACGGTAAGGGGTATGAA
TACGCTCACGACCTGCCGGAGGGGCGTTCGGATCAGGAGCATCTCCCGCCCAATCTGGCCGGACGCATCTATTACGAGCC
GACCGGGCGAGGGTTTGAAGCTGAGGCGCGTGAGCGATTGGCCTGGCGTGAAAAGCGACGCCTGCAAACGCCACCGACCC
CACCACCAGTATCAGAGCCGGCACCCGGCGAAGAGTCGCAATTACCACCCGACGAGCTGGCACCCGGTGAAGAGCCGCAA
CTGCCACCTGCTGCTTCTGCATCACGGCGGCGTGAAAAGCGGGGTAAGGTATAG

Upstream 100 bases:

>100_bases
ATACTGGTATTAACATATTCGCTCAAACCAGCACCGGCCAGTTCGCCGAATATGCTACAATCAAGGATAGTACAACCAGG
GACTTACCGAAGCGTTGGCT

Downstream 100 bases:

>100_bases
CACGTGAACGATGCATTGAAAAACGTAAAAACAAAGGACGCGCCAATGGCGGCGCACATCAGGCGAGGTGAGATGTATGA
TTGAGCGGGCACAAGTGGTT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 497; Mature: 496

Protein sequence:

>497_residues
MPPKPRGTTLFDAQRQQALQQQAPLAARMRPRTLEEFVGQHHLVGEGKLLRRAIANDQLFSLILWGPPGSGKTTLAQIIA
HSTKAHFEPISAVSAGVNDLRRVVQEAQDRLGMFQQRTVVFIDEIHRFNKSQQDAILPYVEDGTIILIGATTENPSFEVN
SALLSRARVFKLEALTDEEIGVLIDRALTDRERGLGDLKIMLARDARDYLVNMANGDARTALNALEAAARSKPPAIGETR
LITVDDIRDALQSRAVRYDKHGELHYDAISALHKSVRDSDPDGALYWLGRMLDGGEDPLYIARRLVRIAVEDIGLADPQA
LPQTIAAQQAVHFLGQPEGELALAQAVVYLCLAPKSNALYRAYGAVQRDVAETRNEPVPLHLRNAPTQLMKRLGYGKGYE
YAHDLPEGRSDQEHLPPNLAGRIYYEPTGRGFEAEARERLAWREKRRLQTPPTPPPVSEPAPGEESQLPPDELAPGEEPQ
LPPAASASRRREKRGKV

Sequences:

>Translated_497_residues
MPPKPRGTTLFDAQRQQALQQQAPLAARMRPRTLEEFVGQHHLVGEGKLLRRAIANDQLFSLILWGPPGSGKTTLAQIIA
HSTKAHFEPISAVSAGVNDLRRVVQEAQDRLGMFQQRTVVFIDEIHRFNKSQQDAILPYVEDGTIILIGATTENPSFEVN
SALLSRARVFKLEALTDEEIGVLIDRALTDRERGLGDLKIMLARDARDYLVNMANGDARTALNALEAAARSKPPAIGETR
LITVDDIRDALQSRAVRYDKHGELHYDAISALHKSVRDSDPDGALYWLGRMLDGGEDPLYIARRLVRIAVEDIGLADPQA
LPQTIAAQQAVHFLGQPEGELALAQAVVYLCLAPKSNALYRAYGAVQRDVAETRNEPVPLHLRNAPTQLMKRLGYGKGYE
YAHDLPEGRSDQEHLPPNLAGRIYYEPTGRGFEAEARERLAWREKRRLQTPPTPPPVSEPAPGEESQLPPDELAPGEEPQ
LPPAASASRRREKRGKV
>Mature_496_residues
PPKPRGTTLFDAQRQQALQQQAPLAARMRPRTLEEFVGQHHLVGEGKLLRRAIANDQLFSLILWGPPGSGKTTLAQIIAH
STKAHFEPISAVSAGVNDLRRVVQEAQDRLGMFQQRTVVFIDEIHRFNKSQQDAILPYVEDGTIILIGATTENPSFEVNS
ALLSRARVFKLEALTDEEIGVLIDRALTDRERGLGDLKIMLARDARDYLVNMANGDARTALNALEAAARSKPPAIGETRL
ITVDDIRDALQSRAVRYDKHGELHYDAISALHKSVRDSDPDGALYWLGRMLDGGEDPLYIARRLVRIAVEDIGLADPQAL
PQTIAAQQAVHFLGQPEGELALAQAVVYLCLAPKSNALYRAYGAVQRDVAETRNEPVPLHLRNAPTQLMKRLGYGKGYEY
AHDLPEGRSDQEHLPPNLAGRIYYEPTGRGFEAEARERLAWREKRRLQTPPTPPPVSEPAPGEESQLPPDELAPGEEPQL
PPAASASRRREKRGKV

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=461, Percent_Identity=48.590021691974, Blast_Score=399, Evalue=1e-111,
Organism=Homo sapiens, GI18426904, Length=461, Percent_Identity=44.468546637744, Blast_Score=345, Evalue=6e-95,
Organism=Escherichia coli, GI1787119, Length=430, Percent_Identity=50.2325581395349, Blast_Score=414, Evalue=1e-117,
Organism=Escherichia coli, GI1788167, Length=127, Percent_Identity=33.8582677165354, Blast_Score=67, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6324111, Length=419, Percent_Identity=42.7207637231504, Blast_Score=343, Evalue=4e-95,
Organism=Saccharomyces cerevisiae, GI6324039, Length=279, Percent_Identity=23.6559139784946, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 55060; Mature: 54929

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPKPRGTTLFDAQRQQALQQQAPLAARMRPRTLEEFVGQHHLVGEGKLLRRAIANDQLF
CCCCCCCCCCHHHHHHHHHHHHCCHHHHCCCHHHHHHCCCCEECCCHHHHHHHHCCCCEE
SLILWGPPGSGKTTLAQIIAHSTKAHFEPISAVSAGVNDLRRVVQEAQDRLGMFQQRTVV
EEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
FIDEIHRFNKSQQDAILPYVEDGTIILIGATTENPSFEVNSALLSRARVFKLEALTDEEI
HHHHHHHHCCCCCCCCCEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHEEECCCCCHH
GVLIDRALTDRERGLGDLKIMLARDARDYLVNMANGDARTALNALEAAARSKPPAIGETR
HHHHHHHHHHHHCCCCCEEEEEHHCHHHHHEECCCCHHHHHHHHHHHHHCCCCCCCCCEE
LITVDDIRDALQSRAVRYDKHGELHYDAISALHKSVRDSDPDGALYWLGRMLDGGEDPLY
EEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHH
IARRLVRIAVEDIGLADPQALPQTIAAQQAVHFLGQPEGELALAQAVVYLCLAPKSNALY
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHH
RAYGAVQRDVAETRNEPVPLHLRNAPTQLMKRLGYGKGYEYAHDLPEGRSDQEHLPPNLA
HHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHCCCCCCCCHHHCCCCCCCCCHHCCCCCC
GRIYYEPTGRGFEAEARERLAWREKRRLQTPPTPPPVSEPAPGEESQLPPDELAPGEEPQ
CEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC
LPPAASASRRREKRGKV
CCCCCCHHHHHHHCCCC
>Mature Secondary Structure 
PPKPRGTTLFDAQRQQALQQQAPLAARMRPRTLEEFVGQHHLVGEGKLLRRAIANDQLF
CCCCCCCCCHHHHHHHHHHHHCCHHHHCCCHHHHHHCCCCEECCCHHHHHHHHCCCCEE
SLILWGPPGSGKTTLAQIIAHSTKAHFEPISAVSAGVNDLRRVVQEAQDRLGMFQQRTVV
EEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
FIDEIHRFNKSQQDAILPYVEDGTIILIGATTENPSFEVNSALLSRARVFKLEALTDEEI
HHHHHHHHCCCCCCCCCEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHEEECCCCCHH
GVLIDRALTDRERGLGDLKIMLARDARDYLVNMANGDARTALNALEAAARSKPPAIGETR
HHHHHHHHHHHHCCCCCEEEEEHHCHHHHHEECCCCHHHHHHHHHHHHHCCCCCCCCCEE
LITVDDIRDALQSRAVRYDKHGELHYDAISALHKSVRDSDPDGALYWLGRMLDGGEDPLY
EEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHH
IARRLVRIAVEDIGLADPQALPQTIAAQQAVHFLGQPEGELALAQAVVYLCLAPKSNALY
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHH
RAYGAVQRDVAETRNEPVPLHLRNAPTQLMKRLGYGKGYEYAHDLPEGRSDQEHLPPNLA
HHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHCCCCCCCCHHHCCCCCCCCCHHCCCCCC
GRIYYEPTGRGFEAEARERLAWREKRRLQTPPTPPPVSEPAPGEESQLPPDELAPGEEPQ
CEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC
LPPAASASRRREKRGKV
CCCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]