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The map label for this gene is abrB [H]

Identifier: 222152166

GI number: 222152166

Start: 2059886

End: 2060173

Strand: Direct

Name: abrB [H]

Synonym: MCCL_1923

Alternate gene names: 222152166

Gene position: 2059886-2060173 (Clockwise)

Preceding gene: 222152137

Following gene: 222152183

Centisome position: 97.98

GC content: 31.6

Gene sequence:

>288_bases
ATGAAATCTACAGGTATCGTAAGAAAAGTTGACGAATTAGGACGCGTTGTTATTCCAATTGAATTACGACGTATTTTAGA
TATTGCTGAGAAAGATGCTTTAGAAATTTATACTGATGCAGATAAAATTATTTTAAAAAAATATAAACCTAGCATGACTT
GTGCTGTCACTGGAGATGTTTCTGAAGACAACTATCTATTAGCTGGCGGTAAACTTGTATTAAGCAAAGAAGGCATCGCA
CAATTACTTAAAGAAATCAAAGAAAAAGAAGAGCAAGAAGAAAATTAA

Upstream 100 bases:

>100_bases
AAACGGTAGTAAACTCTAATTATGCTAAATGTCGAACAATTTAATTCGTGTGTCGAATTTACTGATATTATTAAATATAC
AATTATATGGAGGAAATAAA

Downstream 100 bases:

>100_bases
ATATAATATACATTAAAAAAGGTGCCCTACGGCACCTTTTTTAATGTTCAATATGATAAATGTCATATACTTCATTCTTC
TTCATATTTCTGTCAACTGC

Product: transcriptional regulator abrB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 95; Mature: 95

Protein sequence:

>95_residues
MKSTGIVRKVDELGRVVIPIELRRILDIAEKDALEIYTDADKIILKKYKPSMTCAVTGDVSEDNYLLAGGKLVLSKEGIA
QLLKEIKEKEEQEEN

Sequences:

>Translated_95_residues
MKSTGIVRKVDELGRVVIPIELRRILDIAEKDALEIYTDADKIILKKYKPSMTCAVTGDVSEDNYLLAGGKLVLSKEGIA
QLLKEIKEKEEQEEN
>Mature_95_residues
MKSTGIVRKVDELGRVVIPIELRRILDIAEKDALEIYTDADKIILKKYKPSMTCAVTGDVSEDNYLLAGGKLVLSKEGIA
QLLKEIKEKEEQEEN

Specific function: Ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation. It controls the expression of genes spovG and tycA. AbrB binds to the tycA

COG id: COG2002

COG function: function code K; Regulators of stationary/sporulation gene expression

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis abh and spoVT [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006339
- InterPro:   IPR007159 [H]

Pfam domain/function: PF04014 SpoVT_AbrB [H]

EC number: NA

Molecular weight: Translated: 10662; Mature: 10662

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSTGIVRKVDELGRVVIPIELRRILDIAEKDALEIYTDADKIILKKYKPSMTCAVTGDV
CCCCCHHHHHHHCCCEEECHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCCEEEEEECCC
SEDNYLLAGGKLVLSKEGIAQLLKEIKEKEEQEEN
CCCCEEEECCEEEECHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKSTGIVRKVDELGRVVIPIELRRILDIAEKDALEIYTDADKIILKKYKPSMTCAVTGDV
CCCCCHHHHHHHCCCEEECHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCCEEEEEECCC
SEDNYLLAGGKLVLSKEGIAQLLKEIKEKEEQEEN
CCCCEEEECCEEEECHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3145384; 2554317; 7584024; 9384377; 2504584; 1908787 [H]