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The map label for this gene is sbcD [H]

Identifier: 222151251

GI number: 222151251

Start: 1102903

End: 1104021

Strand: Direct

Name: sbcD [H]

Synonym: MCCL_1002

Alternate gene names: 222151251

Gene position: 1102903-1104021 (Clockwise)

Preceding gene: 222151249

Following gene: 222151252

Centisome position: 52.46

GC content: 37.18

Gene sequence:

>1119_bases
ATGAAAATTATGCATTTAGGTGACTTGCATATTGGCAAGACAATTAATCAGCAAAATTTATTAGAAGAGCAATCGATATT
ATTGAATAGGTTGATTCAAGATATCGTGGATGCATCGATTGATGTATTAGTGATTGCTGGAGATATCTATGATCGTTCGA
TCCCTTCCAGGGAGGCAATGAAGGTATTTGAAACCTTTATCTATGAAGTGAACCAGGTGCAGAAAATTCCCGTACTGCTG
ATCAGCGGTAATCATGATAGTGCAGAACGGCTTGGCTATGGTAAGGCTTGGTATAAAGGGCATGGGATGCATATAGGTAC
TACAATTGATGATGCTTTGAATCCGGTCTCGATAGATGGAGTTGACTTCTATCTTGTCCCTTACATAGAGCCGGTTGTTG
CACGACACTACTTTGAAGATGATAGTATTCGCACGCATCATGATACATATAAGAGAATCTTTGAACAAATTGAACAGCAT
CTCAATAAAGATAGAACAAATATCTTAGTGAGCCATCTATTTGTCGCAGGAGGGAAGACAACTGAGTCCGAAAGAGAGAT
TATCGTCGGTACGATAGAGAATGTCTCCCTCAATCTTTTTGATGCATTCGATTATGTGATGCTCGGACATCTTCATACAC
CAGATGCGATACGTGATGAAAAAGTATTCTATAGTGGGAGTATCATGAAATATTCGTTCGATGAAGTGCATCAAAGAAAG
GGTTACAGAATCTTTGATCTTAAAAAGCAACAGGTCAGCTTTATTACACTGTCACCCCCGAGAGATCTGGAATATGCTAC
TGGAACATTTGAAGATGCGATTAAATTGAAGTTAGCTGTAGATAGAAATTCATATTTAAAGCTTGAGTTAAGTGACATGG
AGCATATCAATGATCCAATGTTTAAGCTTAAGCAAGTATATCCGTATCTATTAGAATTAAAGCCGATGATAAACAATAGG
GATATTCAATATAAACAAAGAGAAGTACAGCAGCTCTCACATTTGGAACTTGTCAAACAGTTTTATCTAGATATGACAGA
TAGTAAGATGGATGAAACGCAGACGTTATTAATAGAACAGCTTATTAATGAAAGTAGGTTAATGGATGAGACCGATTAA

Upstream 100 bases:

>100_bases
GATTTTATTTGAAAATAAATAATGATGAGCTCCCTGTCATTATCAGCACATCTCAGCAATGAGATGTGTTTTTTAGTATA
ATGATATATGAGGTGAGCAC

Downstream 100 bases:

>100_bases
GTTAGAGATTCAGCATTTTGGACCATTTAAAAATGAAACGATCGACTTCAAGCAGGGATTGAAAAACCATACACTTTTTC
TTATCAGTGGTAAGACAGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 372

Protein sequence:

>372_residues
MKIMHLGDLHIGKTINQQNLLEEQSILLNRLIQDIVDASIDVLVIAGDIYDRSIPSREAMKVFETFIYEVNQVQKIPVLL
ISGNHDSAERLGYGKAWYKGHGMHIGTTIDDALNPVSIDGVDFYLVPYIEPVVARHYFEDDSIRTHHDTYKRIFEQIEQH
LNKDRTNILVSHLFVAGGKTTESEREIIVGTIENVSLNLFDAFDYVMLGHLHTPDAIRDEKVFYSGSIMKYSFDEVHQRK
GYRIFDLKKQQVSFITLSPPRDLEYATGTFEDAIKLKLAVDRNSYLKLELSDMEHINDPMFKLKQVYPYLLELKPMINNR
DIQYKQREVQQLSHLELVKQFYLDMTDSKMDETQTLLIEQLINESRLMDETD

Sequences:

>Translated_372_residues
MKIMHLGDLHIGKTINQQNLLEEQSILLNRLIQDIVDASIDVLVIAGDIYDRSIPSREAMKVFETFIYEVNQVQKIPVLL
ISGNHDSAERLGYGKAWYKGHGMHIGTTIDDALNPVSIDGVDFYLVPYIEPVVARHYFEDDSIRTHHDTYKRIFEQIEQH
LNKDRTNILVSHLFVAGGKTTESEREIIVGTIENVSLNLFDAFDYVMLGHLHTPDAIRDEKVFYSGSIMKYSFDEVHQRK
GYRIFDLKKQQVSFITLSPPRDLEYATGTFEDAIKLKLAVDRNSYLKLELSDMEHINDPMFKLKQVYPYLLELKPMINNR
DIQYKQREVQQLSHLELVKQFYLDMTDSKMDETQTLLIEQLINESRLMDETD
>Mature_372_residues
MKIMHLGDLHIGKTINQQNLLEEQSILLNRLIQDIVDASIDVLVIAGDIYDRSIPSREAMKVFETFIYEVNQVQKIPVLL
ISGNHDSAERLGYGKAWYKGHGMHIGTTIDDALNPVSIDGVDFYLVPYIEPVVARHYFEDDSIRTHHDTYKRIFEQIEQH
LNKDRTNILVSHLFVAGGKTTESEREIIVGTIENVSLNLFDAFDYVMLGHLHTPDAIRDEKVFYSGSIMKYSFDEVHQRK
GYRIFDLKKQQVSFITLSPPRDLEYATGTFEDAIKLKLAVDRNSYLKLELSDMEHINDPMFKLKQVYPYLLELKPMINNR
DIQYKQREVQQLSHLELVKQFYLDMTDSKMDETQTLLIEQLINESRLMDETD

Specific function: SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand

COG id: COG0420

COG function: function code L; DNA repair exonuclease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sbcD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004843
- InterPro:   IPR004593 [H]

Pfam domain/function: PF00149 Metallophos [H]

EC number: NA

Molecular weight: Translated: 43263; Mature: 43263

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIMHLGDLHIGKTINQQNLLEEQSILLNRLIQDIVDASIDVLVIAGDIYDRSIPSREAM
CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHCCCCCCHHHH
KVFETFIYEVNQVQKIPVLLISGNHDSAERLGYGKAWYKGHGMHIGTTIDDALNPVSIDG
HHHHHHHHHHHCCCCCCEEEEECCCCCHHHCCCCCCEECCCCEEECCCHHHCCCCEEECC
VDFYLVPYIEPVVARHYFEDDSIRTHHDTYKRIFEQIEQHLNKDRTNILVSHLFVAGGKT
CCEEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC
TESEREIIVGTIENVSLNLFDAFDYVMLGHLHTPDAIRDEKVFYSGSIMKYSFDEVHQRK
CCCCCEEEEEEECCCEEEHHHHHHHHHHCCCCCCCCCCCCEEEECCCEEEECHHHHHHHC
GYRIFDLKKQQVSFITLSPPRDLEYATGTFEDAIKLKLAVDRNSYLKLELSDMEHINDPM
CCEEEEECCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCHHHCCCHH
FKLKQVYPYLLELKPMINNRDIQYKQREVQQLSHLELVKQFYLDMTDSKMDETQTLLIEQ
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LINESRLMDETD
HHHHHHCCCCCC
>Mature Secondary Structure
MKIMHLGDLHIGKTINQQNLLEEQSILLNRLIQDIVDASIDVLVIAGDIYDRSIPSREAM
CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHCCCCCCHHHH
KVFETFIYEVNQVQKIPVLLISGNHDSAERLGYGKAWYKGHGMHIGTTIDDALNPVSIDG
HHHHHHHHHHHCCCCCCEEEEECCCCCHHHCCCCCCEECCCCEEECCCHHHCCCCEEECC
VDFYLVPYIEPVVARHYFEDDSIRTHHDTYKRIFEQIEQHLNKDRTNILVSHLFVAGGKT
CCEEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC
TESEREIIVGTIENVSLNLFDAFDYVMLGHLHTPDAIRDEKVFYSGSIMKYSFDEVHQRK
CCCCCEEEEEEECCCEEEHHHHHHHHHHCCCCCCCCCCCCEEEECCCEEEECHHHHHHHC
GYRIFDLKKQQVSFITLSPPRDLEYATGTFEDAIKLKLAVDRNSYLKLELSDMEHINDPM
CCEEEEECCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCHHHCCCHH
FKLKQVYPYLLELKPMINNRDIQYKQREVQQLSHLELVKQFYLDMTDSKMDETQTLLIEQ
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LINESRLMDETD
HHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on ester bonds [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA