Click here to switch to the map view.

The map label for this gene is xpf [H]

Identifier: 222151167

GI number: 222151167

Start: 1010746

End: 1011306

Strand: Direct

Name: xpf [H]

Synonym: MCCL_0918

Alternate gene names: 222151167

Gene position: 1010746-1011306 (Clockwise)

Preceding gene: 222151166

Following gene: 222151168

Centisome position: 48.08

GC content: 31.73

Gene sequence:

>561_bases
ATGAGAGATTTATTGATAGAGTATATAAAGTCATCTAAAGAACTAAAAGAGCGCATAGAATCATTTAAATTAGAGCATGA
AGACGTACTTGATGCATATAAGGAAAGCAAAGGGAAGAATAAAGGCAAAAATCAGACTGCAGCATGTCCTATCATGAATG
AATTGAATATATTGAATAACATGTATAATGAACAATTATTTATTATTGATTGGCTTCGTTCAGGACATAATCCAAACGAG
CATAGAGCCATTAACAAACGAACTGTATATTTAGTAGATCATAAAGTCTTGGAATCAGTAATTGATGATAATCACTACAA
GAAAGTATCATTTGATGAGTACGATGATTATATTAAAGATGCGAATAATAGTATTAGTCATGCTTTAGGGAGATTGAGTA
AGAGAGAGCTTGAAGTATTCTTGATGATAGACTGCGAAAAAATGAGTTTCCAAGATGTAGCTGAAATATTGAACCTGGCA
AAAGGCTCGATACAGAAATTTTACGAAAGAGCTAAGCAGAAAATAGCTAAAGAAGTCGATTATAACTTGTTTCTTCTGTA
A

Upstream 100 bases:

>100_bases
CAATTGATAAAACAAATGAAAAAATCTCATAAAAAAAGAGCCATACCGGCTCGTGATTTATATATTCGACAACTATATTA
TATCACGCTAGGAGGCTCAT

Downstream 100 bases:

>100_bases
AGTAAAAACACTTGTCAGTGTCTTACGAAATATACATTTACGTAAAGCAAAAATGCTTTACACCTCCTAAAGTGATTAAT
TGTTTACAATCCACCTAGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MRDLLIEYIKSSKELKERIESFKLEHEDVLDAYKESKGKNKGKNQTAACPIMNELNILNNMYNEQLFIIDWLRSGHNPNE
HRAINKRTVYLVDHKVLESVIDDNHYKKVSFDEYDDYIKDANNSISHALGRLSKRELEVFLMIDCEKMSFQDVAEILNLA
KGSIQKFYERAKQKIAKEVDYNLFLL

Sequences:

>Translated_186_residues
MRDLLIEYIKSSKELKERIESFKLEHEDVLDAYKESKGKNKGKNQTAACPIMNELNILNNMYNEQLFIIDWLRSGHNPNE
HRAINKRTVYLVDHKVLESVIDDNHYKKVSFDEYDDYIKDANNSISHALGRLSKRELEVFLMIDCEKMSFQDVAEILNLA
KGSIQKFYERAKQKIAKEVDYNLFLL
>Mature_186_residues
MRDLLIEYIKSSKELKERIESFKLEHEDVLDAYKESKGKNKGKNQTAACPIMNELNILNNMYNEQLFIIDWLRSGHNPNE
HRAINKRTVYLVDHKVLESVIDDNHYKKVSFDEYDDYIKDANNSISHALGRLSKRELEVFLMIDCEKMSFQDVAEILNLA
KGSIQKFYERAKQKIAKEVDYNLFLL

Specific function: Positive regulatory protein that acts at the late promoter PL [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013249
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 21907; Mature: 21907

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDLLIEYIKSSKELKERIESFKLEHEDVLDAYKESKGKNKGKNQTAACPIMNELNILNN
CHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
MYNEQLFIIDWLRSGHNPNEHRAINKRTVYLVDHKVLESVIDDNHYKKVSFDEYDDYIKD
HHCCHHEEEHHHHCCCCCCHHHHCCCCEEEEECHHHHHHHHCCCCCCCCCCHHHHHHHHC
ANNSISHALGRLSKRELEVFLMIDCEKMSFQDVAEILNLAKGSIQKFYERAKQKIAKEVD
CCCHHHHHHHHHHHHCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
YNLFLL
CCEEEC
>Mature Secondary Structure
MRDLLIEYIKSSKELKERIESFKLEHEDVLDAYKESKGKNKGKNQTAACPIMNELNILNN
CHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
MYNEQLFIIDWLRSGHNPNEHRAINKRTVYLVDHKVLESVIDDNHYKKVSFDEYDDYIKD
HHCCHHEEEHHHHCCCCCCHHHHCCCCEEEEECHHHHHHHHCCCCCCCCCCHHHHHHHHC
ANNSISHALGRLSKRELEVFLMIDCEKMSFQDVAEILNLAKGSIQKFYERAKQKIAKEVD
CCCHHHHHHHHHHHHCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
YNLFLL
CCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8083174; 9384377 [H]