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The map label for this gene is rbfA

Identifier: 222151110

GI number: 222151110

Start: 946062

End: 946406

Strand: Direct

Name: rbfA

Synonym: MCCL_0861

Alternate gene names: 222151110

Gene position: 946062-946406 (Clockwise)

Preceding gene: 222151105

Following gene: 222151111

Centisome position: 45.0

GC content: 35.65

Gene sequence:

>345_bases
ATGAGTTTAAGAAGTGAGCGTGTTGGTGAACAGCTTAAGAAAGAAATCAGTGAAATTATCAATCAGAAACTAAAGAATCC
GAATGTCGGTTTTGTAACAGTGACAGAAGTTGAGGTTACGGGTGATTTAAGTCTGGCATCGGTTTATGTAACGGTGCTTG
GAGAAGAGAAGGAGCGTAAGAAATCTTTAGAAGGTCTGGAGAAATCTAAAGGATTCATTAAATCAGAAATCGCACATCGT
ATGGATTTACGTATTGTACCTGACTTGAAATTTAAATATGATGAATCCATTGACTATGGTAATAAAATCGAGCGTATGAT
TGCGGAATTAAATAGAGATAAATAG

Upstream 100 bases:

>100_bases
AAATTTTCTAAAAATTTAGCAAGATACAAAACTGTAAAATTGACAATCAGCAGTGCAAATCCTTATAATAAAAGTAATCG
AAAGTATAGAGGTGAAGTAT

Downstream 100 bases:

>100_bases
ACCAATCACACTTTTTCATGTAAACTATTTTAGAGTTTACTGAAGGAGTGTTTTTTTATGGATGGCATTATCGGTATTAA
TAAGGCACGTGGGATGACGA

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 113

Protein sequence:

>114_residues
MSLRSERVGEQLKKEISEIINQKLKNPNVGFVTVTEVEVTGDLSLASVYVTVLGEEKERKKSLEGLEKSKGFIKSEIAHR
MDLRIVPDLKFKYDESIDYGNKIERMIAELNRDK

Sequences:

>Translated_114_residues
MSLRSERVGEQLKKEISEIINQKLKNPNVGFVTVTEVEVTGDLSLASVYVTVLGEEKERKKSLEGLEKSKGFIKSEIAHR
MDLRIVPDLKFKYDESIDYGNKIERMIAELNRDK
>Mature_113_residues
SLRSERVGEQLKKEISEIINQKLKNPNVGFVTVTEVEVTGDLSLASVYVTVLGEEKERKKSLEGLEKSKGFIKSEIAHRM
DLRIVPDLKFKYDESIDYGNKIERMIAELNRDK

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=110, Percent_Identity=37.2727272727273, Blast_Score=80, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_MACCJ (B9EBF7)

Other databases:

- EMBL:   AP009484
- RefSeq:   YP_002560264.1
- ProteinModelPortal:   B9EBF7
- GeneID:   7391141
- GenomeReviews:   AP009484_GR
- KEGG:   mcl:MCCL_0861
- OMA:   SIEYGNR
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 13071; Mature: 12940

Theoretical pI: Translated: 7.53; Mature: 7.53

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLRSERVGEQLKKEISEIINQKLKNPNVGFVTVTEVEVTGDLSLASVYVTVLGEEKERK
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCHHHHHHHHHHHCCHHHHH
KSLEGLEKSKGFIKSEIAHRMDLRIVPDLKFKYDESIDYGNKIERMIAELNRDK
HHHHHHHHHCCHHHHHHHHHHCCEECCCCCCCCCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SLRSERVGEQLKKEISEIINQKLKNPNVGFVTVTEVEVTGDLSLASVYVTVLGEEKERK
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCHHHHHHHHHHHCCHHHHH
KSLEGLEKSKGFIKSEIAHRMDLRIVPDLKFKYDESIDYGNKIERMIAELNRDK
HHHHHHHHHCCHHHHHHHHHHCCEECCCCCCCCCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA