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The map label for this gene is rbgA [H]

Identifier: 222151078

GI number: 222151078

Start: 904513

End: 905385

Strand: Direct

Name: rbgA [H]

Synonym: MCCL_0829

Alternate gene names: 222151078

Gene position: 904513-905385 (Clockwise)

Preceding gene: 222151073

Following gene: 222151079

Centisome position: 43.02

GC content: 37.69

Gene sequence:

>873_bases
ATGGCAATACAATGGTTCCCAGGACATATGGCAAAGGCAAGGAGAGAAGTTACAGAGCAGCTTAAGCTCGTGGATGTAGT
ATTTGAGCTTGTTGACGCACGTATCCCTTACTCTTCACGTAACCCGATGATTGATGAAGTAATCAAGGATAAACCGCGTG
TCGTATTATTAAATAAGATGGATATGGCAAATTTAAATGAAACAAAAAAGTGGATGTCATATTTTGAGGAACAGGGCTTT
TATCCTGTGCTCATTGACAGTAAAAATGGTAAAAATTTATCTCAAGTTACGAAAGCGGCAGAAATCGTTACGCAAGAAAA
GTTTGAGCGCATGAAGCAAAAAGGGTTACGCCCACGTGCAATTCGTGCAATGATTGTCGGTATTCCAAATGTGGGTAAAT
CAACTTTAATTAATCGCCTTGCAAAGAAATCAATCGCAAAGACAGGGAATATGCCAGGGGTTACAAAGAAACAGCAGTGG
ATTAAGGTTGGAAAGACATTGGAACTATTAGATACACCCGGGATTTTATGGCCAAAGTTTGAAGATCAGACCGTCGGTAA
AAAACTGAGTTTAACAGGTGCAATCAAAGATAGCATTGTTCATCTAGATGAAGTCGCTATATATGGGATCTCATTTTTGC
AGGAAAGAGACCTGGACACATTTAACAAGCACTATAATATTGATGTCACAGTAGATACGCCGTATATTGAAGTATTTGAT
GCGATTGGCAGAAGTCGAGGTCTGAAGTTAAAGGGTAATGAAATAGATTATGAATCGGTTGTAGAATTGATTATAAGAGA
TATACGTAACGAAAAAATTGGAAAATATACATTCGATCATATTTCAATGTTAGAGGTTGATGATGAAGAGTAA

Upstream 100 bases:

>100_bases
TAAAATATTAATTATAAATCATAAAGATATTTTAACATACAATGAAGTAAAGCGTACTTTGTATGATGATTAAATCAAAT
AACTGGAAAGAAGTGAAATT

Downstream 100 bases:

>100_bases
TGACTACACAATCGCTTCACTTAAAGAAAAGGTAAGAGAGATGAATCAAGCAGAACTTATTGATTTTTTTGAAGAAGAGT
CGAGAAGTGGCGCGTTAAAA

Product: ribosomal biogenesis GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 289

Protein sequence:

>290_residues
MAIQWFPGHMAKARREVTEQLKLVDVVFELVDARIPYSSRNPMIDEVIKDKPRVVLLNKMDMANLNETKKWMSYFEEQGF
YPVLIDSKNGKNLSQVTKAAEIVTQEKFERMKQKGLRPRAIRAMIVGIPNVGKSTLINRLAKKSIAKTGNMPGVTKKQQW
IKVGKTLELLDTPGILWPKFEDQTVGKKLSLTGAIKDSIVHLDEVAIYGISFLQERDLDTFNKHYNIDVTVDTPYIEVFD
AIGRSRGLKLKGNEIDYESVVELIIRDIRNEKIGKYTFDHISMLEVDDEE

Sequences:

>Translated_290_residues
MAIQWFPGHMAKARREVTEQLKLVDVVFELVDARIPYSSRNPMIDEVIKDKPRVVLLNKMDMANLNETKKWMSYFEEQGF
YPVLIDSKNGKNLSQVTKAAEIVTQEKFERMKQKGLRPRAIRAMIVGIPNVGKSTLINRLAKKSIAKTGNMPGVTKKQQW
IKVGKTLELLDTPGILWPKFEDQTVGKKLSLTGAIKDSIVHLDEVAIYGISFLQERDLDTFNKHYNIDVTVDTPYIEVFD
AIGRSRGLKLKGNEIDYESVVELIIRDIRNEKIGKYTFDHISMLEVDDEE
>Mature_289_residues
AIQWFPGHMAKARREVTEQLKLVDVVFELVDARIPYSSRNPMIDEVIKDKPRVVLLNKMDMANLNETKKWMSYFEEQGFY
PVLIDSKNGKNLSQVTKAAEIVTQEKFERMKQKGLRPRAIRAMIVGIPNVGKSTLINRLAKKSIAKTGNMPGVTKKQQWI
KVGKTLELLDTPGILWPKFEDQTVGKKLSLTGAIKDSIVHLDEVAIYGISFLQERDLDTFNKHYNIDVTVDTPYIEVFDA
IGRSRGLKLKGNEIDYESVVELIIRDIRNEKIGKYTFDHISMLEVDDEE

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=238, Percent_Identity=34.8739495798319, Blast_Score=146, Evalue=2e-35,
Organism=Homo sapiens, GI296317324, Length=285, Percent_Identity=24.9122807017544, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI9506611, Length=285, Percent_Identity=24.9122807017544, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI7019419, Length=253, Percent_Identity=27.2727272727273, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI45643129, Length=288, Percent_Identity=23.9583333333333, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI45643127, Length=288, Percent_Identity=23.9583333333333, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI45593130, Length=270, Percent_Identity=24.8148148148148, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17534827, Length=284, Percent_Identity=29.2253521126761, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI193211047, Length=223, Percent_Identity=30.0448430493274, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI115535155, Length=189, Percent_Identity=30.1587301587302, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI71982363, Length=189, Percent_Identity=30.1587301587302, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI32563985, Length=249, Percent_Identity=26.1044176706827, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI25143545, Length=189, Percent_Identity=30.1587301587302, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI71990926, Length=249, Percent_Identity=26.1044176706827, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI32563983, Length=249, Percent_Identity=26.1044176706827, Blast_Score=74, Evalue=9e-14,
Organism=Saccharomyces cerevisiae, GI6323744, Length=270, Percent_Identity=28.5185185185185, Blast_Score=88, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6324381, Length=258, Percent_Identity=27.1317829457364, Blast_Score=83, Evalue=7e-17,
Organism=Saccharomyces cerevisiae, GI6320842, Length=299, Percent_Identity=26.0869565217391, Blast_Score=80, Evalue=3e-16,
Organism=Drosophila melanogaster, GI85815858, Length=229, Percent_Identity=33.6244541484716, Blast_Score=120, Evalue=1e-27,
Organism=Drosophila melanogaster, GI28572990, Length=175, Percent_Identity=32.5714285714286, Blast_Score=85, Evalue=4e-17,
Organism=Drosophila melanogaster, GI19922460, Length=257, Percent_Identity=28.0155642023346, Blast_Score=81, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 33215; Mature: 33084

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIQWFPGHMAKARREVTEQLKLVDVVFELVDARIPYSSRNPMIDEVIKDKPRVVLLNKM
CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCEEEEECC
DMANLNETKKWMSYFEEQGFYPVLIDSKNGKNLSQVTKAAEIVTQEKFERMKQKGLRPRA
CCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH
IRAMIVGIPNVGKSTLINRLAKKSIAKTGNMPGVTKKQQWIKVGKTLELLDTPGILWPKF
HHEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCEEEECCCCCCCCCCC
EDQTVGKKLSLTGAIKDSIVHLDEVAIYGISFLQERDLDTFNKHYNIDVTVDTPYIEVFD
CCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCEEEEEEEECCHHHHHHH
AIGRSRGLKLKGNEIDYESVVELIIRDIRNEKIGKYTFDHISMLEVDDEE
HHHHCCCCEECCCCCCHHHHHHHHHHHHCCCCCCCEECCCEEEEEECCCC
>Mature Secondary Structure 
AIQWFPGHMAKARREVTEQLKLVDVVFELVDARIPYSSRNPMIDEVIKDKPRVVLLNKM
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCEEEEECC
DMANLNETKKWMSYFEEQGFYPVLIDSKNGKNLSQVTKAAEIVTQEKFERMKQKGLRPRA
CCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH
IRAMIVGIPNVGKSTLINRLAKKSIAKTGNMPGVTKKQQWIKVGKTLELLDTPGILWPKF
HHEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCEEEECCCCCCCCCCC
EDQTVGKKLSLTGAIKDSIVHLDEVAIYGISFLQERDLDTFNKHYNIDVTVDTPYIEVFD
CCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCEEEEEEEECCHHHHHHH
AIGRSRGLKLKGNEIDYESVVELIIRDIRNEKIGKYTFDHISMLEVDDEE
HHHHCCCCEECCCCCCHHHHHHHHHHHHCCCCCCCEECCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]