BacMap

Definition	Macrococcus caseolyticus JCSC5402, complete genome.
Accession	NC_011999
Length	2,102,324

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The map label for this gene is ytrB [H]

Identifier: 222150664

GI number: 222150664

Start: 439910

End: 440815

Strand: Direct

Name: ytrB [H]

Synonym: MCCL_0414

Alternate gene names: 222150664

Gene position: 439910-440815 (Clockwise)

Preceding gene: 222150663

Following gene: 222150665

Centisome position: 20.92

GC content: 37.09

Gene sequence:

>906_bases
ATGACAATCAGACTGAATAAGGTCAGCAAGTCATTTGGAAAGTTTAAAGCGGTGGACGAAGTTGACTTGATAATAAAGCA
AGGTTCAATTCAAGGGTTACTTGGAAGTAATGGGGCAGGTAAGACAACATTGCTCAAGCTAATTGCAGGTATCTATAAAA
GTGATATTGGACAGATTACAGTAAATGATATGGATATATTCGAAGACATCCATTATAAGGCACATATGATCTTTATCTCT
GACATTCCTTATTTCTTTGGACATGCGAGTCTGGATGAGATGTCTGAGTTCTATAAAATGATGTTTCCCGATTTCAGTGA
AGAACGATACAAACAGCTTGTAAAAGTACTTAATATGAATCCATCTAAGAAGATTGCAAAGTTATCAAAAGGTATGCAGC
GTCAATGTGCATTTATACTAGCGATTGCAGCACGTCCTAAAGTTATGCTGCTGGATGAACCGTTTGATGGATTAGACCCG
ATTGTCAGACATACAATCAAGAATATATTGATTCAGGATGTTACCAATCATGACATGGCTTTGTTCGTGTCTAGCCATAA
TTTAAGGGAGATGGAAGATTTCTGTGATGCGGTAACTTTGATGCATGAAGGACGCGTATTGATGACACGTGACCTTGATG
ACCTAAAAGGAAATGTAGCTAAAATACAGATGGCTTTCAGCACATTACCTGATGAATCATTCTATAAAGGGATGAATGTT
ATCGAGAAAGTGACTAAAGGGCGTGTAGTTACTTGTATCGTAAAAGACAACCTAGACAGAGTAGAAGAATATATTACAAC
GGCAGATCCACTGCTCTATGATATATTACCGCTCACATTAGAAGAAATCTTTACATATGAATTGGGAGGTTACGGTTATG
CAATTGAAAACATCATTGTGGAATAA

Upstream 100 bases:

>100_bases
TTAACAGAGACTTTGCATAAAACAGTGCAGGAATTACTATTTCTAGGTCTGACGAAAGAAGAGATTATAGCAGCAATTGA
AAACATGAGGGGTGAGCACG

Downstream 100 bases:

>100_bases
AGCGCTGTTCAGAAACTTATCTCGCAATATCATGTTTTTGACGGTAATTAATATCATCTGTACATTTATTTTAGTGCCGT
TCTCCTATTTTATGATAGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MTIRLNKVSKSFGKFKAVDEVDLIIKQGSIQGLLGSNGAGKTTLLKLIAGIYKSDIGQITVNDMDIFEDIHYKAHMIFIS
DIPYFFGHASLDEMSEFYKMMFPDFSEERYKQLVKVLNMNPSKKIAKLSKGMQRQCAFILAIAARPKVMLLDEPFDGLDP
IVRHTIKNILIQDVTNHDMALFVSSHNLREMEDFCDAVTLMHEGRVLMTRDLDDLKGNVAKIQMAFSTLPDESFYKGMNV
IEKVTKGRVVTCIVKDNLDRVEEYITTADPLLYDILPLTLEEIFTYELGGYGYAIENIIVE

Sequences:

>Translated_301_residues
MTIRLNKVSKSFGKFKAVDEVDLIIKQGSIQGLLGSNGAGKTTLLKLIAGIYKSDIGQITVNDMDIFEDIHYKAHMIFIS
DIPYFFGHASLDEMSEFYKMMFPDFSEERYKQLVKVLNMNPSKKIAKLSKGMQRQCAFILAIAARPKVMLLDEPFDGLDP
IVRHTIKNILIQDVTNHDMALFVSSHNLREMEDFCDAVTLMHEGRVLMTRDLDDLKGNVAKIQMAFSTLPDESFYKGMNV
IEKVTKGRVVTCIVKDNLDRVEEYITTADPLLYDILPLTLEEIFTYELGGYGYAIENIIVE
>Mature_300_residues
TIRLNKVSKSFGKFKAVDEVDLIIKQGSIQGLLGSNGAGKTTLLKLIAGIYKSDIGQITVNDMDIFEDIHYKAHMIFISD
IPYFFGHASLDEMSEFYKMMFPDFSEERYKQLVKVLNMNPSKKIAKLSKGMQRQCAFILAIAARPKVMLLDEPFDGLDPI
VRHTIKNILIQDVTNHDMALFVSSHNLREMEDFCDAVTLMHEGRVLMTRDLDDLKGNVAKIQMAFSTLPDESFYKGMNVI
EKVTKGRVVTCIVKDNLDRVEEYITTADPLLYDILPLTLEEIFTYELGGYGYAIENIIVE

Specific function: Part of the ABC transporter complex YtrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI153792144, Length=213, Percent_Identity=28.169014084507, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI27881501, Length=210, Percent_Identity=29.5238095238095, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI30795238, Length=210, Percent_Identity=29.5238095238095, Blast_Score=96, Evalue=5e-20,
Organism=Homo sapiens, GI27436953, Length=210, Percent_Identity=26.6666666666667, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI27262624, Length=212, Percent_Identity=27.8301886792453, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI27262626, Length=212, Percent_Identity=27.8301886792453, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI6005701, Length=210, Percent_Identity=27.1428571428571, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI27477115, Length=224, Percent_Identity=29.4642857142857, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI105990541, Length=256, Percent_Identity=25.78125, Blast_Score=82, Evalue=8e-16,
Organism=Homo sapiens, GI31657092, Length=213, Percent_Identity=25.3521126760563, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI45446740, Length=220, Percent_Identity=27.7272727272727, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI47078218, Length=220, Percent_Identity=27.7272727272727, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI116734710, Length=196, Percent_Identity=27.0408163265306, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI21536376, Length=198, Percent_Identity=27.2727272727273, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI150417984, Length=199, Percent_Identity=28.643216080402, Blast_Score=73, Evalue=3e-13,
Organism=Escherichia coli, GI87081782, Length=224, Percent_Identity=27.2321428571429, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI48994943, Length=235, Percent_Identity=27.6595744680851, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI87081709, Length=228, Percent_Identity=28.0701754385965, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87082268, Length=227, Percent_Identity=30.3964757709251, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788761, Length=221, Percent_Identity=29.4117647058824, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI87081791, Length=311, Percent_Identity=25.7234726688103, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1789593, Length=219, Percent_Identity=30.5936073059361, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787029, Length=220, Percent_Identity=29.0909090909091, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788450, Length=217, Percent_Identity=26.2672811059908, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1787370, Length=212, Percent_Identity=27.8301886792453, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1790544, Length=229, Percent_Identity=25.3275109170306, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787164, Length=202, Percent_Identity=26.2376237623762, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788472, Length=228, Percent_Identity=26.3157894736842, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790162, Length=241, Percent_Identity=26.1410788381743, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI48995001, Length=234, Percent_Identity=25.2136752136752, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789032, Length=249, Percent_Identity=24.4979919678715, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787712, Length=218, Percent_Identity=25.2293577981651, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1786319, Length=216, Percent_Identity=22.6851851851852, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1787547, Length=225, Percent_Identity=23.5555555555556, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790525, Length=235, Percent_Identity=26.3829787234043, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788225, Length=222, Percent_Identity=25.6756756756757, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1786872, Length=237, Percent_Identity=27.4261603375527, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787792, Length=213, Percent_Identity=25.3521126760563, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786698, Length=219, Percent_Identity=24.2009132420091, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1789672, Length=220, Percent_Identity=23.6363636363636, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790467, Length=215, Percent_Identity=26.9767441860465, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786398, Length=224, Percent_Identity=24.1071428571429, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788210, Length=225, Percent_Identity=21.7777777777778, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI87082267, Length=167, Percent_Identity=26.9461077844311, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787089, Length=225, Percent_Identity=24.4444444444444, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI48994883, Length=215, Percent_Identity=23.7209302325581, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71983510, Length=223, Percent_Identity=26.9058295964126, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI71983516, Length=223, Percent_Identity=26.9058295964126, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI71983523, Length=223, Percent_Identity=26.9058295964126, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17510237, Length=227, Percent_Identity=25.9911894273128, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17565586, Length=210, Percent_Identity=30.4761904761905, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI115533608, Length=217, Percent_Identity=24.8847926267281, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI193211017, Length=202, Percent_Identity=23.7623762376238, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI193211015, Length=202, Percent_Identity=23.7623762376238, Blast_Score=64, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI25146777, Length=206, Percent_Identity=24.2718446601942, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24643674, Length=227, Percent_Identity=28.1938325991189, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24666092, Length=223, Percent_Identity=27.3542600896861, Blast_Score=88, Evalue=7e-18,
Organism=Drosophila melanogaster, GI24650853, Length=214, Percent_Identity=29.4392523364486, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI281362751, Length=214, Percent_Identity=29.4392523364486, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24650855, Length=214, Percent_Identity=29.4392523364486, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI28574150, Length=249, Percent_Identity=27.3092369477912, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI116007328, Length=249, Percent_Identity=27.3092369477912, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24648314, Length=220, Percent_Identity=27.7272727272727, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI221512771, Length=225, Percent_Identity=27.1111111111111, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI28573571, Length=213, Percent_Identity=23.943661971831, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI221500365, Length=213, Percent_Identity=25.8215962441315, Blast_Score=75, Evalue=7e-14,
Organism=Drosophila melanogaster, GI28573573, Length=210, Percent_Identity=24.2857142857143, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI116007184, Length=213, Percent_Identity=25.8215962441315, Blast_Score=72, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 34173; Mature: 34042

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIRLNKVSKSFGKFKAVDEVDLIIKQGSIQGLLGSNGAGKTTLLKLIAGIYKSDIGQIT
CEEEEHHHHHHHHHHCCCCHHHHHEECCCCCEECCCCCCCHHHHHHHHHHHHHCCCCEEE
VNDMDIFEDIHYKAHMIFISDIPYFFGHASLDEMSEFYKMMFPDFSEERYKQLVKVLNMN
ECHHHHHHHHCCEEEEEEEECCCHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
PSKKIAKLSKGMQRQCAFILAIAARPKVMLLDEPFDGLDPIVRHTIKNILIQDVTNHDMA
CHHHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEE
LFVSSHNLREMEDFCDAVTLMHEGRVLMTRDLDDLKGNVAKIQMAFSTLPDESFYKGMNV
EEEECCCHHHHHHHHHHHHHHHCCCEEEECCHHHHCCCHHHEEEHHHHCCCHHHHHHHHH
IEKVTKGRVVTCIVKDNLDRVEEYITTADPLLYDILPLTLEEIFTYELGGYGYAIENIIV
HHHHHCCCEEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEHHHHCC
E
C
>Mature Secondary Structure 
TIRLNKVSKSFGKFKAVDEVDLIIKQGSIQGLLGSNGAGKTTLLKLIAGIYKSDIGQIT
EEEEHHHHHHHHHHCCCCHHHHHEECCCCCEECCCCCCCHHHHHHHHHHHHHCCCCEEE
VNDMDIFEDIHYKAHMIFISDIPYFFGHASLDEMSEFYKMMFPDFSEERYKQLVKVLNMN
ECHHHHHHHHCCEEEEEEEECCCHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
PSKKIAKLSKGMQRQCAFILAIAARPKVMLLDEPFDGLDPIVRHTIKNILIQDVTNHDMA
CHHHHHHHHHHHHHHHHHHHEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEE
LFVSSHNLREMEDFCDAVTLMHEGRVLMTRDLDDLKGNVAKIQMAFSTLPDESFYKGMNV
EEEECCCHHHHHHHHHHHHHHHCCCEEEECCHHHHCCCHHHEEEHHHHCCCHHHHHHHHH
IEKVTKGRVVTCIVKDNLDRVEEYITTADPLLYDILPLTLEEIFTYELGGYGYAIENIIV
HHHHHCCCEEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEHHHHCC
E
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]