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The map label for this gene is ygbI [C]

Identifier: 222150589

GI number: 222150589

Start: 356316

End: 357032

Strand: Direct

Name: ygbI [C]

Synonym: MCCL_0339

Alternate gene names: 222150589

Gene position: 356316-357032 (Clockwise)

Preceding gene: 222150588

Following gene: 222150590

Centisome position: 16.95

GC content: 36.54

Gene sequence:

>717_bases
ATGGATTTGAAGGATCAGAGATTAAATCAGATTATTGAATTAGTAGAGTCGTCTGGTAAGATGTCGGTTAATGATTTGTC
AGATATGTTAAATGTGACGAAGGAAACGATTCGTCGTGATTTGTCTGAACTTGAAGCGGATAAGCGTATTTCTCGTGTGC
ACGGTGCGGCAATTCCATTTCATAGCGACAGTAAGGAACTATTCTATCATCGTAAGTTATCTGTTAATCTGGATAATAAA
CGTGAGATTGCTAAGCGAGCTGCAGCGTTGATTGAGTCTAACGATATGATTGTTGTCGATGGTGGAACAACGACGGTGCA
CATACCGGAATTTTTAAATGATATTAAAGGTTTGAAGGTTGTTACGAACTCATTGACATTTGCGTTAAAGTTTAATGAGG
CACTGGAGAATGGTCGTGTCGAAGGGGAGTTGATTATTCTCCCTGGAATGAGTTATTACCATCAGAATACAGTGAAAGGT
GCAGTGACTTTAAGCTACTTACAGAACTGTAATTTTGATAAGGCGTTTATATCATGTGGTGGTTATACTGACGAATTTGT
TACAGAGTTTGATATTGATGAAACAGAAATTTCTAAGTTAATGATGAAACAAAGTAAACGTTCTTATTTATTAACTGATC
AGTCGAAGTATGGCAAGGTTAGAGCCTTTAAGATTGCTGATATTGACGAATTTGATAAAGTTATTATGGATAGATGA

Upstream 100 bases:

>100_bases
TGTGACTGGTTTTAATACGTATGGCAGTCTTAAGCGTGGTGGTCGAATGATAGAAATAGATGGTAGTGGATTCAATAGCT
CTATTGTAGAGTAAGGGGGA

Downstream 100 bases:

>100_bases
AGAAGTCACATTCGGTGGCTTCTTTTTTGTATTATATTTGATTTACATTTGTTTTACATTAATTAATGTTTGTTTTACTT
TTGTTTAACGTTAGATTAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MDLKDQRLNQIIELVESSGKMSVNDLSDMLNVTKETIRRDLSELEADKRISRVHGAAIPFHSDSKELFYHRKLSVNLDNK
REIAKRAAALIESNDMIVVDGGTTTVHIPEFLNDIKGLKVVTNSLTFALKFNEALENGRVEGELIILPGMSYYHQNTVKG
AVTLSYLQNCNFDKAFISCGGYTDEFVTEFDIDETEISKLMMKQSKRSYLLTDQSKYGKVRAFKIADIDEFDKVIMDR

Sequences:

>Translated_238_residues
MDLKDQRLNQIIELVESSGKMSVNDLSDMLNVTKETIRRDLSELEADKRISRVHGAAIPFHSDSKELFYHRKLSVNLDNK
REIAKRAAALIESNDMIVVDGGTTTVHIPEFLNDIKGLKVVTNSLTFALKFNEALENGRVEGELIILPGMSYYHQNTVKG
AVTLSYLQNCNFDKAFISCGGYTDEFVTEFDIDETEISKLMMKQSKRSYLLTDQSKYGKVRAFKIADIDEFDKVIMDR
>Mature_238_residues
MDLKDQRLNQIIELVESSGKMSVNDLSDMLNVTKETIRRDLSELEADKRISRVHGAAIPFHSDSKELFYHRKLSVNLDNK
REIAKRAAALIESNDMIVVDGGTTTVHIPEFLNDIKGLKVVTNSLTFALKFNEALENGRVEGELIILPGMSYYHQNTVKG
AVTLSYLQNCNFDKAFISCGGYTDEFVTEFDIDETEISKLMMKQSKRSYLLTDQSKYGKVRAFKIADIDEFDKVIMDR

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI226510968, Length=233, Percent_Identity=29.1845493562232, Blast_Score=103, Evalue=9e-24,
Organism=Escherichia coli, GI1787540, Length=235, Percent_Identity=28.936170212766, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI87082344, Length=235, Percent_Identity=27.6595744680851, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1789829, Length=239, Percent_Identity=30.1255230125523, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1789059, Length=234, Percent_Identity=28.2051282051282, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1789519, Length=236, Percent_Identity=30.0847457627119, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1788069, Length=242, Percent_Identity=27.2727272727273, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787063, Length=237, Percent_Identity=29.1139240506329, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1789170, Length=239, Percent_Identity=28.4518828451883, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1790753, Length=241, Percent_Identity=24.896265560166, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 27044; Mature: 27044

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLKDQRLNQIIELVESSGKMSVNDLSDMLNVTKETIRRDLSELEADKRISRVHGAAIPF
CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
HSDSKELFYHRKLSVNLDNKREIAKRAAALIESNDMIVVDGGTTTVHIPEFLNDIKGLKV
CCCCHHHEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCEEECHHHHHHHCHHHE
VTNSLTFALKFNEALENGRVEGELIILPGMSYYHQNTVKGAVTLSYLQNCNFDKAFISCG
EECCEEEEEEEHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCHHEEECC
GYTDEFVTEFDIDETEISKLMMKQSKRSYLLTDQSKYGKVRAFKIADIDEFDKVIMDR
CCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEECCHHHHHHHHCCC
>Mature Secondary Structure
MDLKDQRLNQIIELVESSGKMSVNDLSDMLNVTKETIRRDLSELEADKRISRVHGAAIPF
CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
HSDSKELFYHRKLSVNLDNKREIAKRAAALIESNDMIVVDGGTTTVHIPEFLNDIKGLKV
CCCCHHHEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCEEECHHHHHHHCHHHE
VTNSLTFALKFNEALENGRVEGELIILPGMSYYHQNTVKGAVTLSYLQNCNFDKAFISCG
EECCEEEEEEEHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCHHEEECC
GYTDEFVTEFDIDETEISKLMMKQSKRSYLLTDQSKYGKVRAFKIADIDEFDKVIMDR
CCCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEECCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12950922 [H]