| Definition | Macrococcus caseolyticus JCSC5402, complete genome. |
|---|---|
| Accession | NC_011999 |
| Length | 2,102,324 |
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The map label for this gene is 222150435
Identifier: 222150435
GI number: 222150435
Start: 192697
End: 193602
Strand: Direct
Name: 222150435
Synonym: MCCL_0185
Alternate gene names: NA
Gene position: 192697-193602 (Clockwise)
Preceding gene: 222150434
Following gene: 222150439
Centisome position: 9.17
GC content: 32.67
Gene sequence:
>906_bases GTGACACAGACATTTATAATGATTATCGCTTTAATATTAACAGGATATTTAATGAAGCGCCTAAACTATATAAAAGAAGA AGAAGGCGGTGTTATTGCTAAACTTATCTTCAATTTAACATTGCCCTCATTGGTCATCGTAACATTAAGCAGCGTTAAGA TTGAACCTTCTTTAATGCTCTTGCCTGTAATTATGGTAATCTATATTGTTATCGCTAAACTGATTGTTATCATTCTATTT CTCAAGTACAATAATCAGATTAGAGGTTCTGTAGGAATGATGGCTGCGGCATTTAATATCGGCTTGTTCGCCTATCCTTT AGTTGGTGAGATGTTCGGTGCAGAGGGATTATTATATTTTGGGATGTTTGATATCGGTGGTTCCATCGGGATGTTTGGTA TTACGTATTTTGTAGGAAATTATTTCAGTGAAGGTGGAGACACGTTTGACATCCGATATTTACTCATGAGCTTAATGAAG ACAGTACCACTTATGACATATATCATCATGCTCGCGATAAACTTACTAGATATACATATACCAGGTGAAATCATTGAATT CTTTAAAATAATTTCACAGGCGAACATGCCTTTATCCATGATATTGCTCGGCGTATATTTAAACTTTAAGGTGGATACAT ATTATTTACCATTAGCAATTAAATATTTATGTTTCCATTATGGATTTGGACTTATTGCAGGGTTGATATGTTATTATACG TTACCATTTAATGAAATGTTCAGAACAACATTGCTTATTGGATGGCTACTTCCTATAGGAGTGGCAATCATCCCGTATGC AATACAATTTAAGTATAAAACATTACCGCTCATAGCGATGATCTCTAATATTACAATTGTTATTTCTATTATTATTTTAT ATATTTTTCAAAAGGTAATCTTATAA
Upstream 100 bases:
>100_bases TAAAGGATACGTATTGATTAAGAAAAATGGTATTGTTGGGTTTGTACCGGAAGAGGTACTGGAATAGATACGTACATCAA TACAGAAAGAAGGCTGATTT
Downstream 100 bases:
>100_bases AAATATATAAAAAAGGATAAAGTGGCATATTAGCCGCTTTATCCCTTTCCTCCCATAAATGAAGGGTATTTTGTCATTCC GCCGTCTACGTAGAGCGTTG
Product: hypothetical protein
Products: NA
Alternate protein names: Permease; Transporter Protein; LOW QUALITY PROTEIN Auxin Efflux Carrier; Malonate Efflux Carrier; Efflux Carrier; Auxin Efflux Carrier Family Protein; Transporter Auxin Efflux Carrier Family; Auxin Efflux Carrier Family Transporter
Number of amino acids: Translated: 301; Mature: 300
Protein sequence:
>301_residues MTQTFIMIIALILTGYLMKRLNYIKEEEGGVIAKLIFNLTLPSLVIVTLSSVKIEPSLMLLPVIMVIYIVIAKLIVIILF LKYNNQIRGSVGMMAAAFNIGLFAYPLVGEMFGAEGLLYFGMFDIGGSIGMFGITYFVGNYFSEGGDTFDIRYLLMSLMK TVPLMTYIIMLAINLLDIHIPGEIIEFFKIISQANMPLSMILLGVYLNFKVDTYYLPLAIKYLCFHYGFGLIAGLICYYT LPFNEMFRTTLLIGWLLPIGVAIIPYAIQFKYKTLPLIAMISNITIVISIIILYIFQKVIL
Sequences:
>Translated_301_residues MTQTFIMIIALILTGYLMKRLNYIKEEEGGVIAKLIFNLTLPSLVIVTLSSVKIEPSLMLLPVIMVIYIVIAKLIVIILF LKYNNQIRGSVGMMAAAFNIGLFAYPLVGEMFGAEGLLYFGMFDIGGSIGMFGITYFVGNYFSEGGDTFDIRYLLMSLMK TVPLMTYIIMLAINLLDIHIPGEIIEFFKIISQANMPLSMILLGVYLNFKVDTYYLPLAIKYLCFHYGFGLIAGLICYYT LPFNEMFRTTLLIGWLLPIGVAIIPYAIQFKYKTLPLIAMISNITIVISIIILYIFQKVIL >Mature_300_residues TQTFIMIIALILTGYLMKRLNYIKEEEGGVIAKLIFNLTLPSLVIVTLSSVKIEPSLMLLPVIMVIYIVIAKLIVIILFL KYNNQIRGSVGMMAAAFNIGLFAYPLVGEMFGAEGLLYFGMFDIGGSIGMFGITYFVGNYFSEGGDTFDIRYLLMSLMKT VPLMTYIIMLAINLLDIHIPGEIIEFFKIISQANMPLSMILLGVYLNFKVDTYYLPLAIKYLCFHYGFGLIAGLICYYTL PFNEMFRTTLLIGWLLPIGVAIIPYAIQFKYKTLPLIAMISNITIVISIIILYIFQKVIL
Specific function: Unknown
COG id: COG0679
COG function: function code R; Predicted permeases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33939; Mature: 33808
Theoretical pI: Translated: 8.51; Mature: 8.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 6.0 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 5.7 %Met (Mature Protein) 6.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQTFIMIIALILTGYLMKRLNYIKEEEGGVIAKLIFNLTLPSLVIVTLSSVKIEPSLML CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCEECCHHHH LPVIMVIYIVIAKLIVIILFLKYNNQIRGSVGMMAAAFNIGLFAYPLVGEMFGAEGLLYF HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE GMFDIGGSIGMFGITYFVGNYFSEGGDTFDIRYLLMSLMKTVPLMTYIIMLAINLLDIHI EHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PGEIIEFFKIISQANMPLSMILLGVYLNFKVDTYYLPLAIKYLCFHYGFGLIAGLICYYT CHHHHHHHHHHHHCCCCHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH LPFNEMFRTTLLIGWLLPIGVAIIPYAIQFKYKTLPLIAMISNITIVISIIILYIFQKVI CCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH L C >Mature Secondary Structure TQTFIMIIALILTGYLMKRLNYIKEEEGGVIAKLIFNLTLPSLVIVTLSSVKIEPSLML CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCEECCHHHH LPVIMVIYIVIAKLIVIILFLKYNNQIRGSVGMMAAAFNIGLFAYPLVGEMFGAEGLLYF HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE GMFDIGGSIGMFGITYFVGNYFSEGGDTFDIRYLLMSLMKTVPLMTYIIMLAINLLDIHI EHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PGEIIEFFKIISQANMPLSMILLGVYLNFKVDTYYLPLAIKYLCFHYGFGLIAGLICYYT CHHHHHHHHHHHHCCCCHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH LPFNEMFRTTLLIGWLLPIGVAIIPYAIQFKYKTLPLIAMISNITIVISIIILYIFQKVI CCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH L C
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA