| Definition | Macrococcus caseolyticus JCSC5402, complete genome. |
|---|---|
| Accession | NC_011999 |
| Length | 2,102,324 |
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The map label for this gene is ybhF [H]
Identifier: 222150355
GI number: 222150355
Start: 109711
End: 110343
Strand: Direct
Name: ybhF [H]
Synonym: MCCL_0105
Alternate gene names: 222150355
Gene position: 109711-110343 (Clockwise)
Preceding gene: 222150354
Following gene: 222150356
Centisome position: 5.22
GC content: 34.44
Gene sequence:
>633_bases TTGAATACAACGTTTCGTGATAAATCATTGACCATGCTACTTGGTGAGAATGGTGCTGGCAAATCAACGTTACTTCGCAT GATTGCAGGTCTTGAAAACCAAGATGAAGGATATATCTTTTATAATGAACAACCATTAGATAAAAAACACATACATAAAA TCCTTGGTTATATTCCACAAGATATTGCATTGTTTGAACATATGTCTGTAGACGACAACATTCATTTATTCAAAGGATTG AATCAACAAGTATTAGATGAAGATACAATTAATCGATACAAGAAGCTACTTAATCTTAATGAAACGACAGCATTAATCAA TACGTTATCAGGCGGGACGAAACGTAAAGTGAACTTACTGATTGGGCTCTTAGGGAAGCCGGAAATAATTATTTTAGATG AGCCGACAGTCGGCATAGATATGAAATCTAGATATGATATCCATCGCCTGCTTAATGAATTAAAGCAACACACTTTAATG ATTATGACGACACATCATATGGATGAGGTAGAGGCCATAGCAGACGAAATTAAATTAATTGGTAAAGATCCTTTCTACAA AGAGGTGCTCGCAGACTCAAATCTGCATTTTGAAAATATGTTGAAAACAGAGGATGATAATGGAACAATTTAA
Upstream 100 bases:
>100_bases ACAATTATTACGGTATTAAATCTCTTACTGTTTGGGTGATATTATGATAACAATAGACAATTTATACAAGAAATATAAAC GTAAAGTTATATTCGAAGGA
Downstream 100 bases:
>100_bases TGAATATCTGGAAAGTATTCAAGATGCACAAAAAATCGAAAAGATTATTCGTTTCAATATTGAAAACAAAAAAGGTATCG ATACATTCTGGAGGAAATAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 210; Mature: 210
Protein sequence:
>210_residues MNTTFRDKSLTMLLGENGAGKSTLLRMIAGLENQDEGYIFYNEQPLDKKHIHKILGYIPQDIALFEHMSVDDNIHLFKGL NQQVLDEDTINRYKKLLNLNETTALINTLSGGTKRKVNLLIGLLGKPEIIILDEPTVGIDMKSRYDIHRLLNELKQHTLM IMTTHHMDEVEAIADEIKLIGKDPFYKEVLADSNLHFENMLKTEDDNGTI
Sequences:
>Translated_210_residues MNTTFRDKSLTMLLGENGAGKSTLLRMIAGLENQDEGYIFYNEQPLDKKHIHKILGYIPQDIALFEHMSVDDNIHLFKGL NQQVLDEDTINRYKKLLNLNETTALINTLSGGTKRKVNLLIGLLGKPEIIILDEPTVGIDMKSRYDIHRLLNELKQHTLM IMTTHHMDEVEAIADEIKLIGKDPFYKEVLADSNLHFENMLKTEDDNGTI >Mature_210_residues MNTTFRDKSLTMLLGENGAGKSTLLRMIAGLENQDEGYIFYNEQPLDKKHIHKILGYIPQDIALFEHMSVDDNIHLFKGL NQQVLDEDTINRYKKLLNLNETTALINTLSGGTKRKVNLLIGLLGKPEIIILDEPTVGIDMKSRYDIHRLLNELKQHTLM IMTTHHMDEVEAIADEIKLIGKDPFYKEVLADSNLHFENMLKTEDDNGTI
Specific function: Unknown
COG id: COG1131
COG function: function code V; ABC-type multidrug transport system, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI153792144, Length=214, Percent_Identity=35.0467289719626, Blast_Score=108, Evalue=3e-24, Organism=Homo sapiens, GI105990541, Length=200, Percent_Identity=34.5, Blast_Score=108, Evalue=4e-24, Organism=Homo sapiens, GI116734710, Length=191, Percent_Identity=35.0785340314136, Blast_Score=108, Evalue=4e-24, Organism=Homo sapiens, GI30795238, Length=207, Percent_Identity=31.4009661835749, Blast_Score=103, Evalue=1e-22, Organism=Homo sapiens, GI27881501, Length=207, Percent_Identity=31.4009661835749, Blast_Score=102, Evalue=2e-22, Organism=Homo sapiens, GI27477115, Length=173, Percent_Identity=35.2601156069364, Blast_Score=101, Evalue=5e-22, Organism=Homo sapiens, GI45446740, Length=185, Percent_Identity=31.8918918918919, Blast_Score=101, Evalue=5e-22, Organism=Homo sapiens, GI47078218, Length=185, Percent_Identity=31.8918918918919, Blast_Score=101, Evalue=5e-22, Organism=Homo sapiens, GI31657092, Length=193, Percent_Identity=33.6787564766839, Blast_Score=101, Evalue=6e-22, Organism=Homo sapiens, GI21536376, Length=205, Percent_Identity=31.7073170731707, Blast_Score=100, Evalue=7e-22, Organism=Homo sapiens, GI150417984, Length=186, Percent_Identity=30.6451612903226, Blast_Score=100, Evalue=8e-22, Organism=Homo sapiens, GI27436953, Length=174, Percent_Identity=35.632183908046, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI27262624, Length=180, Percent_Identity=33.3333333333333, Blast_Score=93, Evalue=1e-19, Organism=Homo sapiens, GI27262626, Length=180, Percent_Identity=33.3333333333333, Blast_Score=93, Evalue=1e-19, Organism=Homo sapiens, GI6005701, Length=187, Percent_Identity=30.4812834224599, Blast_Score=84, Evalue=8e-17, Organism=Homo sapiens, GI46592971, Length=167, Percent_Identity=31.1377245508982, Blast_Score=81, Evalue=6e-16, Organism=Homo sapiens, GI46592956, Length=167, Percent_Identity=31.1377245508982, Blast_Score=81, Evalue=6e-16, Organism=Homo sapiens, GI46592915, Length=167, Percent_Identity=31.1377245508982, Blast_Score=81, Evalue=6e-16, Organism=Homo sapiens, GI46592898, Length=167, Percent_Identity=31.1377245508982, Blast_Score=81, Evalue=6e-16, Organism=Homo sapiens, GI46592978, Length=167, Percent_Identity=31.1377245508982, Blast_Score=81, Evalue=6e-16, Organism=Homo sapiens, GI46592964, Length=167, Percent_Identity=31.1377245508982, Blast_Score=81, Evalue=6e-16, Organism=Homo sapiens, GI215820660, Length=174, Percent_Identity=28.735632183908, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI20143975, Length=174, Percent_Identity=28.735632183908, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI11967971, Length=181, Percent_Identity=27.0718232044199, Blast_Score=68, Evalue=5e-12, Organism=Homo sapiens, GI255708477, Length=216, Percent_Identity=26.8518518518519, Blast_Score=66, Evalue=2e-11, Organism=Escherichia coli, GI87081782, Length=182, Percent_Identity=34.6153846153846, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1788761, Length=185, Percent_Identity=32.972972972973, Blast_Score=93, Evalue=1e-20, Organism=Escherichia coli, GI1787792, Length=220, Percent_Identity=27.2727272727273, Blast_Score=84, Evalue=6e-18, Organism=Escherichia coli, GI1788165, Length=167, Percent_Identity=32.3353293413174, Blast_Score=82, Evalue=2e-17, Organism=Escherichia coli, GI1790467, Length=189, Percent_Identity=30.6878306878307, Blast_Score=82, Evalue=2e-17, Organism=Escherichia coli, GI1789593, Length=194, Percent_Identity=28.3505154639175, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI87081709, Length=190, Percent_Identity=28.9473684210526, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI48994943, Length=176, Percent_Identity=30.1136363636364, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1788450, Length=194, Percent_Identity=31.4432989690722, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI87082267, Length=177, Percent_Identity=31.638418079096, Blast_Score=81, Evalue=5e-17, Organism=Escherichia coli, GI1787712, Length=193, Percent_Identity=28.4974093264249, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI87081791, Length=228, Percent_Identity=29.3859649122807, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1788897, Length=212, Percent_Identity=25.9433962264151, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1786319, Length=187, Percent_Identity=31.0160427807487, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1787164, Length=170, Percent_Identity=34.1176470588235, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1787370, Length=189, Percent_Identity=28.042328042328, Blast_Score=74, Evalue=6e-15, Organism=Escherichia coli, GI1786345, Length=166, Percent_Identity=27.710843373494, Blast_Score=73, Evalue=1e-14, Organism=Escherichia coli, GI48995001, Length=196, Percent_Identity=27.0408163265306, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1790190, Length=192, Percent_Identity=27.0833333333333, Blast_Score=72, Evalue=2e-14, Organism=Escherichia coli, GI1787029, Length=183, Percent_Identity=25.6830601092896, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1790162, Length=186, Percent_Identity=30.6451612903226, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1788225, Length=182, Percent_Identity=26.9230769230769, Blast_Score=70, Evalue=9e-14, Organism=Escherichia coli, GI1790739, Length=196, Percent_Identity=23.469387755102, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1788472, Length=191, Percent_Identity=26.7015706806283, Blast_Score=68, Evalue=4e-13, Organism=Escherichia coli, GI1786563, Length=215, Percent_Identity=26.5116279069767, Blast_Score=68, Evalue=4e-13, Organism=Escherichia coli, GI1790525, Length=204, Percent_Identity=26.4705882352941, Blast_Score=67, Evalue=8e-13, Organism=Escherichia coli, GI1789991, Length=184, Percent_Identity=29.3478260869565, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1788210, Length=192, Percent_Identity=29.6875, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1786398, Length=181, Percent_Identity=28.7292817679558, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1786872, Length=206, Percent_Identity=27.6699029126214, Blast_Score=66, Evalue=1e-12, Organism=Escherichia coli, GI1787112, Length=165, Percent_Identity=29.6969696969697, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1789873, Length=196, Percent_Identity=25.5102040816327, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1789672, Length=202, Percent_Identity=23.2673267326733, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1786703, Length=166, Percent_Identity=32.5301204819277, Blast_Score=64, Evalue=6e-12, Organism=Escherichia coli, GI1789864, Length=206, Percent_Identity=25.2427184466019, Blast_Score=64, Evalue=7e-12, Organism=Escherichia coli, GI1786698, Length=180, Percent_Identity=27.7777777777778, Blast_Score=62, Evalue=2e-11, Organism=Escherichia coli, GI1787089, Length=180, Percent_Identity=25, Blast_Score=60, Evalue=7e-11, Organism=Escherichia coli, GI1786803, Length=162, Percent_Identity=27.1604938271605, Blast_Score=60, Evalue=8e-11, Organism=Caenorhabditis elegans, GI115533608, Length=205, Percent_Identity=33.1707317073171, Blast_Score=118, Evalue=2e-27, Organism=Caenorhabditis elegans, GI17565586, Length=174, Percent_Identity=32.183908045977, Blast_Score=103, Evalue=6e-23, Organism=Caenorhabditis elegans, GI17510237, Length=174, Percent_Identity=32.7586206896552, Blast_Score=100, Evalue=5e-22, Organism=Caenorhabditis elegans, GI71983523, Length=176, Percent_Identity=35.2272727272727, Blast_Score=100, Evalue=5e-22, Organism=Caenorhabditis elegans, GI71983516, Length=176, Percent_Identity=35.2272727272727, Blast_Score=100, Evalue=5e-22, Organism=Caenorhabditis elegans, GI71983510, Length=176, Percent_Identity=35.2272727272727, Blast_Score=100, Evalue=5e-22, Organism=Caenorhabditis elegans, GI17511077, Length=195, Percent_Identity=26.1538461538462, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17558664, Length=180, Percent_Identity=28.3333333333333, Blast_Score=64, Evalue=5e-11, Organism=Caenorhabditis elegans, GI71992285, Length=198, Percent_Identity=27.7777777777778, Blast_Score=64, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6324498, Length=188, Percent_Identity=26.5957446808511, Blast_Score=65, Evalue=9e-12, Organism=Saccharomyces cerevisiae, GI6325199, Length=170, Percent_Identity=29.4117647058824, Blast_Score=63, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6324398, Length=188, Percent_Identity=26.063829787234, Blast_Score=62, Evalue=7e-11, Organism=Drosophila melanogaster, GI24666092, Length=200, Percent_Identity=33.5, Blast_Score=110, Evalue=1e-24, Organism=Drosophila melanogaster, GI221512771, Length=180, Percent_Identity=35, Blast_Score=108, Evalue=4e-24, Organism=Drosophila melanogaster, GI116007328, Length=184, Percent_Identity=32.0652173913043, Blast_Score=107, Evalue=8e-24, Organism=Drosophila melanogaster, GI28574150, Length=184, Percent_Identity=32.0652173913043, Blast_Score=106, Evalue=1e-23, Organism=Drosophila melanogaster, GI24643674, Length=182, Percent_Identity=32.4175824175824, Blast_Score=100, Evalue=9e-22, Organism=Drosophila melanogaster, GI85725262, Length=177, Percent_Identity=35.5932203389831, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI281362751, Length=180, Percent_Identity=35, Blast_Score=91, Evalue=5e-19, Organism=Drosophila melanogaster, GI24650855, Length=177, Percent_Identity=34.4632768361582, Blast_Score=89, Evalue=2e-18, Organism=Drosophila melanogaster, GI24650853, Length=177, Percent_Identity=34.4632768361582, Blast_Score=89, Evalue=2e-18, Organism=Drosophila melanogaster, GI28573571, Length=186, Percent_Identity=30.1075268817204, Blast_Score=88, Evalue=4e-18, Organism=Drosophila melanogaster, GI28573573, Length=186, Percent_Identity=30.1075268817204, Blast_Score=87, Evalue=5e-18, Organism=Drosophila melanogaster, GI221500365, Length=190, Percent_Identity=27.8947368421053, Blast_Score=84, Evalue=6e-17, Organism=Drosophila melanogaster, GI116007184, Length=190, Percent_Identity=27.8947368421053, Blast_Score=84, Evalue=6e-17, Organism=Drosophila melanogaster, GI24582014, Length=179, Percent_Identity=32.4022346368715, Blast_Score=83, Evalue=1e-16, Organism=Drosophila melanogaster, GI24582012, Length=179, Percent_Identity=32.4022346368715, Blast_Score=83, Evalue=1e-16, Organism=Drosophila melanogaster, GI24648314, Length=181, Percent_Identity=29.8342541436464, Blast_Score=82, Evalue=2e-16, Organism=Drosophila melanogaster, GI28574533, Length=169, Percent_Identity=31.9526627218935, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI85724858, Length=149, Percent_Identity=34.2281879194631, Blast_Score=74, Evalue=5e-14, Organism=Drosophila melanogaster, GI85724856, Length=149, Percent_Identity=34.2281879194631, Blast_Score=74, Evalue=5e-14, Organism=Drosophila melanogaster, GI24580547, Length=149, Percent_Identity=34.2281879194631, Blast_Score=74, Evalue=5e-14, Organism=Drosophila melanogaster, GI24580551, Length=149, Percent_Identity=34.2281879194631, Blast_Score=74, Evalue=5e-14, Organism=Drosophila melanogaster, GI24580549, Length=149, Percent_Identity=34.2281879194631, Blast_Score=74, Evalue=5e-14, Organism=Drosophila melanogaster, GI24580545, Length=149, Percent_Identity=34.2281879194631, Blast_Score=74, Evalue=5e-14, Organism=Drosophila melanogaster, GI24581191, Length=170, Percent_Identity=30.5882352941176, Blast_Score=74, Evalue=5e-14, Organism=Drosophila melanogaster, GI24581189, Length=170, Percent_Identity=30.5882352941176, Blast_Score=74, Evalue=5e-14, Organism=Drosophila melanogaster, GI24581193, Length=170, Percent_Identity=30.5882352941176, Blast_Score=74, Evalue=5e-14, Organism=Drosophila melanogaster, GI24581195, Length=170, Percent_Identity=30.5882352941176, Blast_Score=74, Evalue=5e-14, Organism=Drosophila melanogaster, GI161076682, Length=172, Percent_Identity=29.0697674418605, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI161076684, Length=172, Percent_Identity=29.0697674418605, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI24581617, Length=172, Percent_Identity=29.0697674418605, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI24581615, Length=172, Percent_Identity=29.0697674418605, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI19920532, Length=175, Percent_Identity=31.4285714285714, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI24580930, Length=175, Percent_Identity=31.4285714285714, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI24581383, Length=173, Percent_Identity=28.3236994219653, Blast_Score=71, Evalue=5e-13, Organism=Drosophila melanogaster, GI24581385, Length=173, Percent_Identity=28.3236994219653, Blast_Score=71, Evalue=5e-13, Organism=Drosophila melanogaster, GI24581387, Length=172, Percent_Identity=28.4883720930233, Blast_Score=71, Evalue=5e-13, Organism=Drosophila melanogaster, GI85724864, Length=170, Percent_Identity=29.4117647058824, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24580555, Length=170, Percent_Identity=29.4117647058824, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI85816269, Length=170, Percent_Identity=29.4117647058824, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24580553, Length=170, Percent_Identity=29.4117647058824, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI28574744, Length=188, Percent_Identity=28.1914893617021, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 23988; Mature: 23988
Theoretical pI: Translated: 5.32; Mature: 5.32
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTTFRDKSLTMLLGENGAGKSTLLRMIAGLENQDEGYIFYNEQPLDKKHIHKILGYIPQ CCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCH DIALFEHMSVDDNIHLFKGLNQQVLDEDTINRYKKLLNLNETTALINTLSGGTKRKVNLL HHHHHHHCCCCCCCHHHHCCCHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEEE IGLLGKPEIIILDEPTVGIDMKSRYDIHRLLNELKQHTLMIMTTHHMDEVEAIADEIKLI EEECCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHEEEEEEECCHHHHHHHHHHHHHC GKDPFYKEVLADSNLHFENMLKTEDDNGTI CCCCHHHHHHCCCCCCHHHHHCCCCCCCCC >Mature Secondary Structure MNTTFRDKSLTMLLGENGAGKSTLLRMIAGLENQDEGYIFYNEQPLDKKHIHKILGYIPQ CCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCH DIALFEHMSVDDNIHLFKGLNQQVLDEDTINRYKKLLNLNETTALINTLSGGTKRKVNLL HHHHHHHCCCCCCCHHHHCCCHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEEE IGLLGKPEIIILDEPTVGIDMKSRYDIHRLLNELKQHTLMIMTTHHMDEVEAIADEIKLI EEECCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHEEEEEEECCHHHHHHHHHHHHHC GKDPFYKEVLADSNLHFENMLKTEDDNGTI CCCCHHHHHHCCCCCCHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503 [H]