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The map label for this gene is psd

Identifier: 222111228

GI number: 222111228

Start: 2176807

End: 2177658

Strand: Direct

Name: psd

Synonym: Dtpsy_2036

Alternate gene names: 222111228

Gene position: 2176807-2177658 (Clockwise)

Preceding gene: 222111223

Following gene: 222111231

Centisome position: 57.34

GC content: 63.26

Gene sequence:

>852_bases
GTGTCTGATCGTATCGCCGTACTGCCTCAGTACTTGTTACCCAAACAAGCCCTGACCTCCTTTGCCGGACGTATGGCGTC
TGCGCGTGCGGGCCAATTGACCACCGCGGTGATCCGCCGGTTTGTGGCGCGCTACGGCGTGGACATGAGCGAGGCGGCCA
ATCCGGACATTGCGAGCTACGCAACCTTCAACGACTTCTTCACACGTGCGTTGCGCCCTGGACTGCGCCCGCTTGCCGAT
GCTGCGGTGGTATGCCCTGTGGATGGAGCGGTCAGCCAGATCGGTCCTATCGAGCAGGACCAGATCTTCCAAGCCAAGGG
CCACCTCTACTCCACCGCGGCTCTGCTTGGCGGCGACGCCGAAATGGCCGCGCAGTTCCAGGATGGCAGCTTCGCCACCA
TCTATCTCAGTCCACGCGACTACCACCGCATTCACATGCCGTGCGATGGACGACTGGTGCGTATGGACCATGTGCCTGGG
GCATTGTTTTCAGTGAACCCGACCACCGCACGCGGTGTGCCCGGACTGTTTGCGCGCAACGAACGTGTGGTCTGCCTGTT
CGAAACGCCCCTGGGCCCCATGGCGCTCGTGCTGGTAGGCGCCACCATTGTCGGCAGCATGGCCACGGTATGGCACGGCC
AGGTCAATCCACCGCGTACCGGCCAACCGCGCCGCTGGGATTATGGGGACCGAGAAGTCGTGCTTCGTCAGGGTGATGAA
ATGGGGCGTTTTCTGCTGGGCTCCACGGTCGTGCTGCTGTTTCCCCGCGGCGCAGTTCAGTTCATGCCGGGATGGGAAGC
AGCGCGGCCCGTGCGGCTGGGTGAAGCTATGGCGCACCGCTGCGGCATCTAG

Upstream 100 bases:

>100_bases
CACTATCACAGGCAGTCCACAACCGCACGGGACGTACGGCTGGGGCGCAATCCACCCTCCCCTTAGAATCATCCGACTCC
ATCACCAGGATTACCGCCAC

Downstream 100 bases:

>100_bases
TTCACCTATTGGTGCGTTGATACCCGCTGTTCAGTGCCTCTCTGGCACCCGAGCAGTGGTAAACAAGGTGGGCTCGAGTT
CCAGATCCAGGGGGTCCACG

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MSDRIAVLPQYLLPKQALTSFAGRMASARAGQLTTAVIRRFVARYGVDMSEAANPDIASYATFNDFFTRALRPGLRPLAD
AAVVCPVDGAVSQIGPIEQDQIFQAKGHLYSTAALLGGDAEMAAQFQDGSFATIYLSPRDYHRIHMPCDGRLVRMDHVPG
ALFSVNPTTARGVPGLFARNERVVCLFETPLGPMALVLVGATIVGSMATVWHGQVNPPRTGQPRRWDYGDREVVLRQGDE
MGRFLLGSTVVLLFPRGAVQFMPGWEAARPVRLGEAMAHRCGI

Sequences:

>Translated_283_residues
MSDRIAVLPQYLLPKQALTSFAGRMASARAGQLTTAVIRRFVARYGVDMSEAANPDIASYATFNDFFTRALRPGLRPLAD
AAVVCPVDGAVSQIGPIEQDQIFQAKGHLYSTAALLGGDAEMAAQFQDGSFATIYLSPRDYHRIHMPCDGRLVRMDHVPG
ALFSVNPTTARGVPGLFARNERVVCLFETPLGPMALVLVGATIVGSMATVWHGQVNPPRTGQPRRWDYGDREVVLRQGDE
MGRFLLGSTVVLLFPRGAVQFMPGWEAARPVRLGEAMAHRCGI
>Mature_282_residues
SDRIAVLPQYLLPKQALTSFAGRMASARAGQLTTAVIRRFVARYGVDMSEAANPDIASYATFNDFFTRALRPGLRPLADA
AVVCPVDGAVSQIGPIEQDQIFQAKGHLYSTAALLGGDAEMAAQFQDGSFATIYLSPRDYHRIHMPCDGRLVRMDHVPGA
LFSVNPTTARGVPGLFARNERVVCLFETPLGPMALVLVGATIVGSMATVWHGQVNPPRTGQPRRWDYGDREVVLRQGDEM
GRFLLGSTVVLLFPRGAVQFMPGWEAARPVRLGEAMAHRCGI

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily

Homologues:

Organism=Homo sapiens, GI13489112, Length=294, Percent_Identity=31.2925170068027, Blast_Score=133, Evalue=2e-31,
Organism=Escherichia coli, GI1790604, Length=275, Percent_Identity=55.6363636363636, Blast_Score=301, Evalue=4e-83,
Organism=Caenorhabditis elegans, GI71980843, Length=246, Percent_Identity=33.739837398374, Blast_Score=115, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI71980840, Length=271, Percent_Identity=32.4723247232472, Blast_Score=115, Evalue=3e-26,
Organism=Saccharomyces cerevisiae, GI6321609, Length=229, Percent_Identity=26.6375545851528, Blast_Score=91, Evalue=2e-19,
Organism=Saccharomyces cerevisiae, GI6324160, Length=159, Percent_Identity=35.2201257861635, Blast_Score=79, Evalue=8e-16,
Organism=Drosophila melanogaster, GI24649526, Length=273, Percent_Identity=33.3333333333333, Blast_Score=116, Evalue=1e-26,
Organism=Drosophila melanogaster, GI24649528, Length=273, Percent_Identity=33.3333333333333, Blast_Score=116, Evalue=1e-26,
Organism=Drosophila melanogaster, GI24649524, Length=273, Percent_Identity=33.3333333333333, Blast_Score=116, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_ACIET (B9MAC0)

Other databases:

- EMBL:   CP001392
- RefSeq:   YP_002553492.1
- GeneID:   7385029
- GenomeReviews:   CP001392_GR
- KEGG:   dia:Dtpsy_2036
- ProtClustDB:   PRK00044
- HAMAP:   MF_00662
- InterPro:   IPR003817
- InterPro:   IPR005221
- PANTHER:   PTHR10067
- TIGRFAMs:   TIGR00163

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 30770; Mature: 30639

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDRIAVLPQYLLPKQALTSFAGRMASARAGQLTTAVIRRFVARYGVDMSEAANPDIASY
CCCCCEECHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHCCCCCHHHH
ATFNDFFTRALRPGLRPLADAAVVCPVDGAVSQIGPIEQDQIFQAKGHLYSTAALLGGDA
HHHHHHHHHHHCCCCCHHHCCEEEECCCCHHHHCCCCCHHHHHHHCCCEEEEHHHHCCCH
EMAAQFQDGSFATIYLSPRDYHRIHMPCDGRLVRMDHVPGALFSVNPTTARGVPGLFARN
HHHEEECCCCEEEEEECCCCCEEEECCCCCEEEEEECCCCCEEEECCCCCCCCCCCEECC
ERVVCLFETPLGPMALVLVGATIVGSMATVWHGQVNPPRTGQPRRWDYGDREVVLRQGDE
CEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCH
MGRFLLGSTVVLLFPRGAVQFMPGWEAARPVRLGEAMAHRCGI
HHHHHHCCEEEEEECCCCEEECCCCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
SDRIAVLPQYLLPKQALTSFAGRMASARAGQLTTAVIRRFVARYGVDMSEAANPDIASY
CCCCEECHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHCCCCCHHHH
ATFNDFFTRALRPGLRPLADAAVVCPVDGAVSQIGPIEQDQIFQAKGHLYSTAALLGGDA
HHHHHHHHHHHCCCCCHHHCCEEEECCCCHHHHCCCCCHHHHHHHCCCEEEEHHHHCCCH
EMAAQFQDGSFATIYLSPRDYHRIHMPCDGRLVRMDHVPGALFSVNPTTARGVPGLFARN
HHHEEECCCCEEEEEECCCCCEEEECCCCCEEEEEECCCCCEEEECCCCCCCCCCCEECC
ERVVCLFETPLGPMALVLVGATIVGSMATVWHGQVNPPRTGQPRRWDYGDREVVLRQGDE
CEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCH
MGRFLLGSTVVLLFPRGAVQFMPGWEAARPVRLGEAMAHRCGI
HHHHHHCCEEEEEECCCCEEECCCCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA