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The map label for this gene is sodC2 [H]

Identifier: 222111073

GI number: 222111073

Start: 2001169

End: 2001696

Strand: Direct

Name: sodC2 [H]

Synonym: Dtpsy_1880

Alternate gene names: 222111073

Gene position: 2001169-2001696 (Clockwise)

Preceding gene: 222111072

Following gene: 222111074

Centisome position: 52.71

GC content: 71.4

Gene sequence:

>528_bases
ATGTCCCTTCGCTACCTCCCCACGGCCGCGGCCCTGGCGGCTGCCATCGCACTCGCCGGCTGCGCATCCATGTCCAGCGC
GCCCTCGGCCACCGCACGGCTGGAGCCTACGCGCGGCAACAGCACCCAGGGCACGGTGCGCTTCGTGCAGAGCGGTGATG
CGGTGCGCGTCAGCGGCACGGTCAGCGGGCTCAAGCCGGGGGCGGAGCACGGCTTTCACATCCATGAGAAAGGCGACTGC
TCCAGCGGGGACGGCAACAGCGCGGGCGGCCACTTCAATCCCACGGGCACACCGCACGGCCAACACGGCAAGGGACCGCA
CCACACCGGCGACCTGCCCAGCCTGCGCGCGGACGGCAACGGCGTGGCCACCTTCAACTTCGAGTCGCGCAGCATTCGCG
TGGGCTCCGGCGCCACCGACATCGTGGGTCGCGGCCTGATCGTGCATGCCAACCCCGACGACTACGTCACCCAACCTACC
GGCAACGCGGGCGCGCGCCTGGCGTGCGCGGTGATCGCCGGTCGCTGA

Upstream 100 bases:

>100_bases
GCAGCGCATGGGCATCCACGACCGGGCGCTCTCGCGTCTGATTGCGTTGGCGCGCGAACCGCGTTAGTTTGGCGGTTTTC
AACCCTCCTGGAGAAATCGC

Downstream 100 bases:

>100_bases
TCGTGCAGGGCTGGGCGCCCTGCGGGCACAATCCCCGCATGAGCCACAGCCCTCTTTCCTCCTCCATCGCCGACCTGCGC
AAGAGCTACGAGCGCGCCGA

Product: superoxide dismutase copper/zinc-binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 174

Protein sequence:

>175_residues
MSLRYLPTAAALAAAIALAGCASMSSAPSATARLEPTRGNSTQGTVRFVQSGDAVRVSGTVSGLKPGAEHGFHIHEKGDC
SSGDGNSAGGHFNPTGTPHGQHGKGPHHTGDLPSLRADGNGVATFNFESRSIRVGSGATDIVGRGLIVHANPDDYVTQPT
GNAGARLACAVIAGR

Sequences:

>Translated_175_residues
MSLRYLPTAAALAAAIALAGCASMSSAPSATARLEPTRGNSTQGTVRFVQSGDAVRVSGTVSGLKPGAEHGFHIHEKGDC
SSGDGNSAGGHFNPTGTPHGQHGKGPHHTGDLPSLRADGNGVATFNFESRSIRVGSGATDIVGRGLIVHANPDDYVTQPT
GNAGARLACAVIAGR
>Mature_174_residues
SLRYLPTAAALAAAIALAGCASMSSAPSATARLEPTRGNSTQGTVRFVQSGDAVRVSGTVSGLKPGAEHGFHIHEKGDCS
SGDGNSAGGHFNPTGTPHGQHGKGPHHTGDLPSLRADGNGVATFNFESRSIRVGSGATDIVGRGLIVHANPDDYVTQPTG
NAGARLACAVIAGR

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI4826665, Length=140, Percent_Identity=40.7142857142857, Blast_Score=104, Evalue=5e-23,
Organism=Homo sapiens, GI4507149, Length=139, Percent_Identity=43.8848920863309, Blast_Score=91, Evalue=5e-19,
Organism=Escherichia coli, GI1787934, Length=138, Percent_Identity=35.5072463768116, Blast_Score=70, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17554806, Length=135, Percent_Identity=42.962962962963, Blast_Score=92, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI71981876, Length=147, Percent_Identity=39.4557823129252, Blast_Score=90, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI71981879, Length=147, Percent_Identity=39.4557823129252, Blast_Score=89, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI17537871, Length=173, Percent_Identity=36.4161849710983, Blast_Score=87, Evalue=4e-18,
Organism=Saccharomyces cerevisiae, GI6322564, Length=137, Percent_Identity=41.6058394160584, Blast_Score=89, Evalue=5e-19,
Organism=Drosophila melanogaster, GI85725006, Length=180, Percent_Identity=36.6666666666667, Blast_Score=99, Evalue=1e-21,
Organism=Drosophila melanogaster, GI45551081, Length=180, Percent_Identity=36.6666666666667, Blast_Score=99, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24652737, Length=180, Percent_Identity=36.6666666666667, Blast_Score=99, Evalue=1e-21,
Organism=Drosophila melanogaster, GI116007680, Length=180, Percent_Identity=36.6666666666667, Blast_Score=99, Evalue=1e-21,
Organism=Drosophila melanogaster, GI17136496, Length=138, Percent_Identity=44.2028985507246, Blast_Score=90, Evalue=6e-19,
Organism=Drosophila melanogaster, GI281363087, Length=118, Percent_Identity=44.0677966101695, Blast_Score=85, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24652342, Length=118, Percent_Identity=44.0677966101695, Blast_Score=85, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 17564; Mature: 17432

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00087 SOD_CU_ZN_1 ; PS00332 SOD_CU_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLRYLPTAAALAAAIALAGCASMSSAPSATARLEPTRGNSTQGTVRFVQSGDAVRVSGT
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEEEECCCEEEEEEE
VSGLKPGAEHGFHIHEKGDCSSGDGNSAGGHFNPTGTPHGQHGKGPHHTGDLPSLRADGN
CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
GVATFNFESRSIRVGSGATDIVGRGLIVHANPDDYVTQPTGNAGARLACAVIAGR
EEEEEEECCCEEEECCCCHHHHCCCEEEECCCCCCEECCCCCCCCEEEEEEEECC
>Mature Secondary Structure 
SLRYLPTAAALAAAIALAGCASMSSAPSATARLEPTRGNSTQGTVRFVQSGDAVRVSGT
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEEEECCCEEEEEEE
VSGLKPGAEHGFHIHEKGDCSSGDGNSAGGHFNPTGTPHGQHGKGPHHTGDLPSLRADGN
CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
GVATFNFESRSIRVGSGATDIVGRGLIVHANPDDYVTQPTGNAGARLACAVIAGR
EEEEEEECCCEEEECCCCHHHHCCCEEEECCCCCCEECCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]