| Definition | Acidovorax ebreus TPSY chromosome, complete genome. |
|---|---|
| Accession | NC_011992 |
| Length | 3,796,573 |
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The map label for this gene is 222110699
Identifier: 222110699
GI number: 222110699
Start: 1579297
End: 1581867
Strand: Direct
Name: 222110699
Synonym: Dtpsy_1502
Alternate gene names: NA
Gene position: 1579297-1581867 (Clockwise)
Preceding gene: 222110689
Following gene: 222110700
Centisome position: 41.6
GC content: 73.2
Gene sequence:
>2571_bases ATGACACCCATAGCAAAAGACGATCACGCCGCAGCGTGCAGCGCGGGGTGGCGCGCGGTTTTCGAGCAGGTGCGCTCAGC GGCCGCGCAGCGCGGCGCGCACCTGGCGGCCACCGTGGTGCTGGTGCCGTACGCCCAGCTCATGGGCGAGGCGCGCCGGC AATGGCAGCGCGCCTACCCTCAGGGTTTCGCGCCGCGCTTCGAGACCACGCGCAACTGGGCTGCCCAGCTGGGCGCGCCT CTGGCGGAGGGCAGCGAGTACGCGGGCGATATGGCGCGCGATGCGGTCACCGCACGTGCATTGCTCGACCACGCCGGTCT TGCCGCGCACCGCGAAGTCCTCAGCGGTCCGCTGCTGGAGATGGCTGCGCAGTTGGCGGTGGTGGCAGCGGCCGTGGCTC CTGGCCGGCGCCCGGACTGGGGCGAGGCGGCGCGCGCCCTGCTGCCGGCGGCGGGCGACGGTGGCGCGCTCCGGCTGGAG GCCGCCGCAGCGCGCATCGCCCTGGAATGGGTGCTGGCCTCGCGCCACGTGGGGGATGTGCTGTTCGAGTCTGGCGTGCG TGCGGCCGTGCCGCTGCTTGTGGTGGTGCAGGGCTTCCAACCCGACCCCCTGGCCCGCACGCTGGCGCAGCACTGGGCAG AGGCGGGCCTTGTCGTGGACCTGCCGCAGGTGATGGACGGCGGGAAGGCCGGCGTGCCAACCTTGCATGCCGTGCCCGAT GCCGAGGACGAGGCCCAGCGCGCCGCCGCCTGTGTGCTGCAGCACCTGGCGCAGGGACAGGCGCCCGTGGCACTGGTGGC CAACGACCGCGCGCTCACCCGCCGCATCAGTGCCTTGCTCGCCGGCGCGGGCGTGGCAGTGCACGACGAAAACGGCTGGC TGCTCTCCACCACCCACGCCGCGGCGCGGCTGATGGCGGTGCTGCAGGCCGGTGCCTGGGACGCCACCGCCGATGCCGTG CTCGACTGGCTCAAGCAGTCGCCCGCGGTGGATGGGGCCGCACTGCGCGCGCTGGAGCACTGGCTGCGCCGTGCGGGCGC CCGGCATTGGAGCGGCGCGGTGACGCAACTGCAGGCGTTGGCTGAGCGGCGCCCGGCCGAGGCCGCGTTGGCGGACCAGG TACAGGCCTGGCGCGCGCAGCTGCGGGCCGCGCGGCCGCTGGCCCAGTGGTTGCAGTCGCTGCGCGTGCTGCTGCAGGAC TGCGGCCTGTGGGACGGGCTGCAGCAGGACGAGGCCGGTGCGCGCGTGCTGGCCGAGCTGCGCCTGCCCGAGGGCCTGCA GGACGATCTGCAGGACATGGACGGGGCCGGTGCGCGCATGGCGCTGGCGGACTTCACACGCTGGGTGGGAGAGGTGCTGG AATGCGCGCGCTATCGACCGGCCTATGTGGACGATGCACCCGTGGTGGTTCTGCCCCTGCCGCAGCTGCTGGCGCGCCCG TTCGCTGCGCTGGTGCTGCCCGGCTGCGATGAGAAACGCCTGCAGGCCGCGCCTGAACCGCCCGGCCCCTGGACGCAGGC GCAGCGCGAGGGACTGGGGCTGCCCACGCGCGACCTGTTGGCCGCCGCGCAGCGCGCCGCCTGGCGGCAGGCCCTGCGTA TTGCGCGTGTCGACCTCCTGTGGCGCGTGGGTGACGAGGGGGGCGAACCCCTCCTGCCGAGTCCGCTGGTCCAGGCGCTT CGGCTGGACGGAACCGGCACGGACGGTGCCGATCCCCGGGTGACGCGCAGCGTGCCCGTGGCACCCACGGCGCGTCCGCT GCCGGTGGGCGCGCAGCTGCCGGTGCAGCGGCTGTCGTCCTCGGCATATTCCGACCTGCGCCACTGTCCCTACCGCTTCT TCGCGCTGCGCCAACTGCAGCTGCAGGAAGACGACGAACTGGACGCCGGGCTGGACAAACGTGACTTCGGCACCTGGCTG CATGCCGTGCTGCAGCACTTCCATGAGGCGTTGCAGGACGCGCCCACGGGCGACGCCGCGGCGCGCACGGCGCTCATGGA CGAGGCGGCTGCGCGCGCCACGCGCGAGCTGGGGCTGCAGGAGGGCGACTTCCTGCCCTACGCCTCGGGATGGCCCGCGC TGCGCGCCGGCTATCTGGAATGGCTGGGCAAGCACGAAGCCGCTGGCGCCTGTTTTCGCCAGGCCGAGTTGCGCGCGCGC CAGCCGCTGGGCGCGCTGGAACTGGTCGGCACACTGGACCGTGTGGACGCCGTGCGCCCGCAGGGCGGCGGCGAGCCCCT CACGCTGGTGATCGACTACAAGACCGAGAGCGACGCCCTCACGCGCGGGCGCATCAAGGCCGGGGCCGAGGACACACAGC TCGCCTTCTACGCCGCGTTGCTGCAGGACGACACCCTGCGGGCTGCCTACGTGAATGTGGGTGAGCGCGGCGAAACCCGG CTGCACGAGCAGGACGACGTGGTGCACCTGCGCGACTTGCTGCTGGGCGGCATCACGCACGACATGCAGCGCATTGCAGC CGGCGCGCCGCTGCCCGCGTTGGGCGAGGGCAGCGTGTGCGAATGGTGCGCCGCGCGCGGTTTGTGCCGCAAGGATTTCT GGAATGAGTGA
Upstream 100 bases:
>100_bases TCCTTGTGTGAGCAGTGGGCGATGCCGGTACGTATAAAGTCCAGTCATTGTGACAGAAACCGAATCCCTGCATCCTCATA TGGCCGGTGCTTGTAACGCT
Downstream 100 bases:
>100_bases AGCTGCCGCGCAAGCCGCCTACGAACACAACGGCCAACCGGTCACGCGGGAGGCCTTCTACGCCATTGCCTGCGACCCGC AGCGCAGCGTGGCCGTGGAG
Product: exonuclease-like protein
Products: NA
Alternate protein names: Exonuclease-Like Protein; Exonuclease-Like; Helicase C_term Recb Family Exonuclease; Inactivated Superfamily I Helicase-Like Protein; Helicase C_term RecB Family Exonuclease; Inactivated Superfamily I Helicase
Number of amino acids: Translated: 856; Mature: 855
Protein sequence:
>856_residues MTPIAKDDHAAACSAGWRAVFEQVRSAAAQRGAHLAATVVLVPYAQLMGEARRQWQRAYPQGFAPRFETTRNWAAQLGAP LAEGSEYAGDMARDAVTARALLDHAGLAAHREVLSGPLLEMAAQLAVVAAAVAPGRRPDWGEAARALLPAAGDGGALRLE AAAARIALEWVLASRHVGDVLFESGVRAAVPLLVVVQGFQPDPLARTLAQHWAEAGLVVDLPQVMDGGKAGVPTLHAVPD AEDEAQRAAACVLQHLAQGQAPVALVANDRALTRRISALLAGAGVAVHDENGWLLSTTHAAARLMAVLQAGAWDATADAV LDWLKQSPAVDGAALRALEHWLRRAGARHWSGAVTQLQALAERRPAEAALADQVQAWRAQLRAARPLAQWLQSLRVLLQD CGLWDGLQQDEAGARVLAELRLPEGLQDDLQDMDGAGARMALADFTRWVGEVLECARYRPAYVDDAPVVVLPLPQLLARP FAALVLPGCDEKRLQAAPEPPGPWTQAQREGLGLPTRDLLAAAQRAAWRQALRIARVDLLWRVGDEGGEPLLPSPLVQAL RLDGTGTDGADPRVTRSVPVAPTARPLPVGAQLPVQRLSSSAYSDLRHCPYRFFALRQLQLQEDDELDAGLDKRDFGTWL HAVLQHFHEALQDAPTGDAAARTALMDEAAARATRELGLQEGDFLPYASGWPALRAGYLEWLGKHEAAGACFRQAELRAR QPLGALELVGTLDRVDAVRPQGGGEPLTLVIDYKTESDALTRGRIKAGAEDTQLAFYAALLQDDTLRAAYVNVGERGETR LHEQDDVVHLRDLLLGGITHDMQRIAAGAPLPALGEGSVCEWCAARGLCRKDFWNE
Sequences:
>Translated_856_residues MTPIAKDDHAAACSAGWRAVFEQVRSAAAQRGAHLAATVVLVPYAQLMGEARRQWQRAYPQGFAPRFETTRNWAAQLGAP LAEGSEYAGDMARDAVTARALLDHAGLAAHREVLSGPLLEMAAQLAVVAAAVAPGRRPDWGEAARALLPAAGDGGALRLE AAAARIALEWVLASRHVGDVLFESGVRAAVPLLVVVQGFQPDPLARTLAQHWAEAGLVVDLPQVMDGGKAGVPTLHAVPD AEDEAQRAAACVLQHLAQGQAPVALVANDRALTRRISALLAGAGVAVHDENGWLLSTTHAAARLMAVLQAGAWDATADAV LDWLKQSPAVDGAALRALEHWLRRAGARHWSGAVTQLQALAERRPAEAALADQVQAWRAQLRAARPLAQWLQSLRVLLQD CGLWDGLQQDEAGARVLAELRLPEGLQDDLQDMDGAGARMALADFTRWVGEVLECARYRPAYVDDAPVVVLPLPQLLARP FAALVLPGCDEKRLQAAPEPPGPWTQAQREGLGLPTRDLLAAAQRAAWRQALRIARVDLLWRVGDEGGEPLLPSPLVQAL RLDGTGTDGADPRVTRSVPVAPTARPLPVGAQLPVQRLSSSAYSDLRHCPYRFFALRQLQLQEDDELDAGLDKRDFGTWL HAVLQHFHEALQDAPTGDAAARTALMDEAAARATRELGLQEGDFLPYASGWPALRAGYLEWLGKHEAAGACFRQAELRAR QPLGALELVGTLDRVDAVRPQGGGEPLTLVIDYKTESDALTRGRIKAGAEDTQLAFYAALLQDDTLRAAYVNVGERGETR LHEQDDVVHLRDLLLGGITHDMQRIAAGAPLPALGEGSVCEWCAARGLCRKDFWNE >Mature_855_residues TPIAKDDHAAACSAGWRAVFEQVRSAAAQRGAHLAATVVLVPYAQLMGEARRQWQRAYPQGFAPRFETTRNWAAQLGAPL AEGSEYAGDMARDAVTARALLDHAGLAAHREVLSGPLLEMAAQLAVVAAAVAPGRRPDWGEAARALLPAAGDGGALRLEA AAARIALEWVLASRHVGDVLFESGVRAAVPLLVVVQGFQPDPLARTLAQHWAEAGLVVDLPQVMDGGKAGVPTLHAVPDA EDEAQRAAACVLQHLAQGQAPVALVANDRALTRRISALLAGAGVAVHDENGWLLSTTHAAARLMAVLQAGAWDATADAVL DWLKQSPAVDGAALRALEHWLRRAGARHWSGAVTQLQALAERRPAEAALADQVQAWRAQLRAARPLAQWLQSLRVLLQDC GLWDGLQQDEAGARVLAELRLPEGLQDDLQDMDGAGARMALADFTRWVGEVLECARYRPAYVDDAPVVVLPLPQLLARPF AALVLPGCDEKRLQAAPEPPGPWTQAQREGLGLPTRDLLAAAQRAAWRQALRIARVDLLWRVGDEGGEPLLPSPLVQALR LDGTGTDGADPRVTRSVPVAPTARPLPVGAQLPVQRLSSSAYSDLRHCPYRFFALRQLQLQEDDELDAGLDKRDFGTWLH AVLQHFHEALQDAPTGDAAARTALMDEAAARATRELGLQEGDFLPYASGWPALRAGYLEWLGKHEAAGACFRQAELRARQ PLGALELVGTLDRVDAVRPQGGGEPLTLVIDYKTESDALTRGRIKAGAEDTQLAFYAALLQDDTLRAAYVNVGERGETRL HEQDDVVHLRDLLLGGITHDMQRIAAGAPLPALGEGSVCEWCAARGLCRKDFWNE
Specific function: Unknown
COG id: COG2887
COG function: function code L; RecB family exonuclease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 91962; Mature: 91831
Theoretical pI: Translated: 5.54; Mature: 5.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPIAKDDHAAACSAGWRAVFEQVRSAAAQRGAHLAATVVLVPYAQLMGEARRQWQRAYP CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC QGFAPRFETTRNWAAQLGAPLAEGSEYAGDMARDAVTARALLDHAGLAAHREVLSGPLLE CCCCCCHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH MAAQLAVVAAAVAPGRRPDWGEAARALLPAAGDGGALRLEAAAARIALEWVLASRHVGDV HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHH LFESGVRAAVPLLVVVQGFQPDPLARTLAQHWAEAGLVVDLPQVMDGGKAGVPTLHAVPD HHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEECHHHHCCCCCCCCCEECCCC AEDEAQRAAACVLQHLAQGQAPVALVANDRALTRRISALLAGAGVAVHDENGWLLSTTHA CHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCEEEECCCCCEEEHHHH AARLMAVLQAGAWDATADAVLDWLKQSPAVDGAALRALEHWLRRAGARHWSGAVTQLQAL HHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH AERRPAEAALADQVQAWRAQLRAARPLAQWLQSLRVLLQDCGLWDGLQQDEAGARVLAEL HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH RLPEGLQDDLQDMDGAGARMALADFTRWVGEVLECARYRPAYVDDAPVVVLPLPQLLARP CCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHCH FAALVLPGCDEKRLQAAPEPPGPWTQAQREGLGLPTRDLLAAAQRAAWRQALRIARVDLL HHHHHCCCCCHHHHCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH WRVGDEGGEPLLPSPLVQALRLDGTGTDGADPRVTRSVPVAPTARPLPVGAQLPVQRLSS HEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH SAYSDLRHCPYRFFALRQLQLQEDDELDAGLDKRDFGTWLHAVLQHFHEALQDAPTGDAA HHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHH ARTALMDEAAARATRELGLQEGDFLPYASGWPALRAGYLEWLGKHEAAGACFRQAELRAR HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHH QPLGALELVGTLDRVDAVRPQGGGEPLTLVIDYKTESDALTRGRIKAGAEDTQLAFYAAL CCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCHHHHCHHCCCCCHHHHHHHHHH LQDDTLRAAYVNVGERGETRLHEQDDVVHLRDLLLGGITHDMQRIAAGAPLPALGEGSVC HHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH EWCAARGLCRKDFWNE HHHHHCCCHHHHCCCC >Mature Secondary Structure TPIAKDDHAAACSAGWRAVFEQVRSAAAQRGAHLAATVVLVPYAQLMGEARRQWQRAYP CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC QGFAPRFETTRNWAAQLGAPLAEGSEYAGDMARDAVTARALLDHAGLAAHREVLSGPLLE CCCCCCHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH MAAQLAVVAAAVAPGRRPDWGEAARALLPAAGDGGALRLEAAAARIALEWVLASRHVGDV HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHH LFESGVRAAVPLLVVVQGFQPDPLARTLAQHWAEAGLVVDLPQVMDGGKAGVPTLHAVPD HHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEECHHHHCCCCCCCCCEECCCC AEDEAQRAAACVLQHLAQGQAPVALVANDRALTRRISALLAGAGVAVHDENGWLLSTTHA CHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCEEEECCCCCEEEHHHH AARLMAVLQAGAWDATADAVLDWLKQSPAVDGAALRALEHWLRRAGARHWSGAVTQLQAL HHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH AERRPAEAALADQVQAWRAQLRAARPLAQWLQSLRVLLQDCGLWDGLQQDEAGARVLAEL HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH RLPEGLQDDLQDMDGAGARMALADFTRWVGEVLECARYRPAYVDDAPVVVLPLPQLLARP CCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHCH FAALVLPGCDEKRLQAAPEPPGPWTQAQREGLGLPTRDLLAAAQRAAWRQALRIARVDLL HHHHHCCCCCHHHHCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH WRVGDEGGEPLLPSPLVQALRLDGTGTDGADPRVTRSVPVAPTARPLPVGAQLPVQRLSS HEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH SAYSDLRHCPYRFFALRQLQLQEDDELDAGLDKRDFGTWLHAVLQHFHEALQDAPTGDAA HHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHH ARTALMDEAAARATRELGLQEGDFLPYASGWPALRAGYLEWLGKHEAAGACFRQAELRAR HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHH QPLGALELVGTLDRVDAVRPQGGGEPLTLVIDYKTESDALTRGRIKAGAEDTQLAFYAAL CCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCHHHHCHHCCCCCHHHHHHHHHH LQDDTLRAAYVNVGERGETRLHEQDDVVHLRDLLLGGITHDMQRIAAGAPLPALGEGSVC HHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH EWCAARGLCRKDFWNE HHHHHCCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA